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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21821.1
DDBJ      :             putative pyridoxamine 5-phosphate-dependent dehydrase
Swiss-Prot:             

Homologs  Archaea  36/68 : Bacteria  571/915 : Eukaryota  12/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:400 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->393 2gmsB PDBj 1e-55 33.0 %
:RPS:PDB   1->259 3dr4C PDBj 7e-20 29.5 %
:RPS:SCOP  14->261 1o61A  c.67.1.4 * 2e-44 25.3 %
:HMM:SCOP  2->402 1b9hA_ c.67.1.4 * 4.9e-90 32.3 %
:RPS:PFM   21->261 PF01041 * DegT_DnrJ_EryC1 3e-29 34.5 %
:HMM:PFM   16->392 PF01041 * DegT_DnrJ_EryC1 1.7e-93 32.3 353/363  
:BLT:SWISS 34->390 RFBH_SALTY 3e-35 33.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21821.1 GT:GENE AAZ21821.1 GT:PRODUCT putative pyridoxamine 5-phosphate-dependent dehydrase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 993416..994618 GB:FROM 993416 GB:TO 994618 GB:DIRECTION + GB:PRODUCT putative pyridoxamine 5-phosphate-dependent dehydrase GB:NOTE similar to Escherichia coli gb|AAL67563.1 GB:PROTEIN_ID AAZ21821.1 GB:DB_XREF GI:71062818 LENGTH 400 SQ:AASEQ MYKYPLLTNAFNSKDINEGIKVLKTRFITMSKVTEKFEDYFAKKMGSKYAVMTNSGSSANLLALSCLTHPFNKEKLSSKDEVIIPAICWSTTLWPIIQNNLKPIFVDVDLNSFNIDTAKIISKINKRTKAIMLVHVLGTSANMTKLVKIAKKYKLKIIEDTCESLGAEYNNKKLGTIGNFGTYSFYYSHQITSGEGGMIVCDNLQDYNILKTLRSHGWSRNTSFHNYYKKKYKMLDDKFLFIGPGYNVRPTDIQAAIALNQFKRLNKFIKIRNNNRSRIIKTLQKHKKWDNQFKFVSVDKKIKPSWFGLPIQINDKFFKSKKKFLNFLSTKGIETRPIISGNFLNQPASKIYKFKSKKKDFINANEIEKKGFFIGLHTKPLKNDELKFIVENLLNINLFK GT:EXON 1|1-400:0| BL:SWS:NREP 1 BL:SWS:REP 34->390|RFBH_SALTY|3e-35|33.1|350/437| SEG 54->67|nsgssanllalscl| SEG 145->158|klvkiakkyklkii| SEG 227->233|yykkkyk| SEG 263->281|krlnkfikirnnnrsriik| SEG 316->331|kffkskkkflnflstk| SEG 349->362|skiykfkskkkdfi| BL:PDB:NREP 1 BL:PDB:REP 1->393|2gmsB|1e-55|33.0|385/389| RP:PDB:NREP 1 RP:PDB:REP 1->259|3dr4C|7e-20|29.5|237/368| RP:PFM:NREP 1 RP:PFM:REP 21->261|PF01041|3e-29|34.5|220/358|DegT_DnrJ_EryC1| HM:PFM:NREP 1 HM:PFM:REP 16->392|PF01041|1.7e-93|32.3|353/363|DegT_DnrJ_EryC1| RP:SCP:NREP 1 RP:SCP:REP 14->261|1o61A|2e-44|25.3|225/374|c.67.1.4| HM:SCP:REP 2->402|1b9hA_|4.9e-90|32.3|372/0|c.67.1.4|1/1|PLP-dependent transferases| OP:NHOMO 1312 OP:NHOMOORG 619 OP:PATTERN -----1--1-------1311111----2-1--222-1211--112-1414-11111-1-12---1-12 265-4------------11-1---2-1-111-----22111322-41-----21------5121333--4---------211-11341621--511---333343325-6---------------2132122214145575---1-4221224122212111213212264412112124111---1-221--3--1-1-1--1-1-2---3333-12-1--21-------12------------------1-------------1-----1---------------------------------------------------111343334444533--2231---34-1--11321334311-1--21---121211-11111113424122-11111111111111-11111313211-----3415353132-11-11--2213111111111111--7-1-----------------------------1-----333233222222222211224444242243133123226222--3132-1141-2-4111111111-2-212215222115322138348424531212-14-4432-443452131111111431122241---2113112112241112211122-32---1111------23232322332222222-32222222323223323322224475232333333332333322211222321233333323333--1-44444222221--21112-21----2--1--11--11211-212125321--21-1112111111112211-11111-1--2--2-1--112------52225546--------21--------------------------2233212221241 -------------1---------212-------111--------------1---------------------------------------------------------2------------------------------------------------------1--------------2F------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 393 STR:RPRED 98.2 SQ:SECSTR ccccccccccccccHHHHHHHHHHHTccccccHHHHHHHHHHHHHTccEEEEEccHHHHHHHHHHHTTccTTGGcccTTcEEEEEccccTHHHHHHHHTTcEEEEEcccTTTccccHHHHGGGccTTEEEEccccGGGccccHHHHHHHHHHTTcEEEEEcTTcTTcEETTEETTccccEEEEEccTTccccccccEEEEEccHHHHHHHHHHHcTTccTTcTTccTTccccTTcTcTTccccccccccccHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHTTcccEEEcEEcccccccccccccEEEEEEcTTccccHHHHHHHHHHTTccccccTTccGGGcHHHHTTccEEEccccHHHHHHHHHEEEEEcccccccHHHHHHHHHHc####### DISOP:02AL 400-401| PSIPRED ccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHcccEEEEEEcccccccccHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHccEEEEEcccccccccccEEccccccEEEEEccccccccccccEEEEEccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccEEEEEEEEEcccccccHHHHHHHHHHccccEEEEccHHHcccHHHHHHcccccccccHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHccc //