[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21883.1
DDBJ      :             Putative Holliday junction resolvase
Swiss-Prot:RUVX_PELUB   RecName: Full=Putative Holliday junction resolvase;         EC=3.1.-.-;

Homologs  Archaea  0/68 : Bacteria  287/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:151 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->150 1vhxA PDBj 5e-13 36.4 %
:RPS:SCOP  16->150 1vhxA  c.55.3.8 * 9e-27 34.1 %
:HMM:SCOP  13->150 1nu0A_ c.55.3.8 * 1.6e-34 37.7 %
:RPS:PFM   16->147 PF03652 * UPF0081 6e-20 40.0 %
:HMM:PFM   16->147 PF03652 * UPF0081 2.1e-39 40.9 132/135  
:BLT:SWISS 1->151 RUVX_PELUB 1e-71 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21883.1 GT:GENE AAZ21883.1 GT:PRODUCT Putative Holliday junction resolvase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1045593..1046048 GB:FROM 1045593 GB:TO 1046048 GB:DIRECTION + GB:PRODUCT Putative Holliday junction resolvase GB:PROTEIN_ID AAZ21883.1 GB:DB_XREF GI:71062880 LENGTH 151 SQ:AASEQ MITIEDFKIKHTNKVRFIGLDLGSKRIGVSICDERQSIATPFKTINKTNTNELIDELKIIIKDNNIGGIIVGNPVNMDGSLGRSAQSVNDVASNISKSIDLPVILWDERLSTVGAFNLSSLLDVNVSKRVKTIDQNAAAFILQGAIDFLNN GT:EXON 1|1-151:0| SW:ID RUVX_PELUB SW:DE RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; SW:GN OrderedLocusNames=SAR11_1079; SW:KW Complete proteome; Cytoplasm; DNA damage; DNA recombination;DNA repair; Hydrolase; Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->151|RUVX_PELUB|1e-71|100.0|151/151| GO:SWS:NREP 6 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006310|"GO:DNA recombination"|DNA recombination| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| SEG 59->73|iiikdnniggiivgn| BL:PDB:NREP 1 BL:PDB:REP 15->150|1vhxA|5e-13|36.4|129/134| RP:PFM:NREP 1 RP:PFM:REP 16->147|PF03652|6e-20|40.0|130/134|UPF0081| HM:PFM:NREP 1 HM:PFM:REP 16->147|PF03652|2.1e-39|40.9|132/135|UPF0081| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03652|IPR005227| GO:PFM GO:0006281|"GO:DNA repair"|PF03652|IPR005227| GO:PFM GO:0006310|"GO:DNA recombination"|PF03652|IPR005227| GO:PFM GO:0006974|"GO:response to DNA damage stimulus"|PF03652|IPR005227| GO:PFM GO:0016788|"GO:hydrolase activity, acting on ester bonds"|PF03652|IPR005227| RP:SCP:NREP 1 RP:SCP:REP 16->150|1vhxA|9e-27|34.1|135/140|c.55.3.8| HM:SCP:REP 13->150|1nu0A_|1.6e-34|37.7|138/0|c.55.3.8|1/1|Ribonuclease H-like| OP:NHOMO 288 OP:NHOMOORG 287 OP:PATTERN -------------------------------------------------------------------- 111--------11----11-1---1-111111-------------1------11---------------1------------------------------------------------------------------11111---111-1111-1-11-------1111111--------------------1111111111111111111111111111111111111111111--111111111-1111111-1-1--1-111--11------1--11--1-----11-111-11-111-----------------------11111111111111111111111111111111111111111111111------111111111111111111111111111111111-111111111111111111-11111111111111111111111111111111-11111-1------111111111111111----111111----------------------------------------------------------------------------1----1--------------11-1-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 136 STR:RPRED 90.1 SQ:SECSTR ##############EEEEEEEEcccEEEEEEEcTEEEEEEEEEEccGGGTcccHHHHHHHHTTcEEEEEEEEccccTTTcccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHTccTccHHHHHHHHHHHHHHHHHHHHHHHHT# DISOP:02AL 120-132, 150-151| PSIPRED cccHHHHHHHccccccEEEEEEccEEEEEEEEccccccccccEEEEccccHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcc //