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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21889.1
DDBJ      :             Endoribonuclease L-PSP
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  265/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
d.79.1
:153 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->153 3d01F PDBj 6e-29 46.2 %
:RPS:PDB   1->152 3d01A PDBj 4e-25 42.0 %
:RPS:SCOP  4->152 2otmA1  d.79.1.1 * 7e-51 35.1 %
:HMM:SCOP  9->153 1qu9A_ d.79.1.1 * 7.8e-21 31.2 %
:RPS:PFM   20->152 PF01042 * Ribonuc_L-PSP 2e-11 39.5 %
:HMM:PFM   19->150 PF01042 * Ribonuc_L-PSP 1.6e-18 25.4 114/121  
:BLT:SWISS 17->149 Y854_PYRHO 6e-08 36.6 %
:PROS 126->133|PS00369|PTS_HPR_HIS

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21889.1 GT:GENE AAZ21889.1 GT:PRODUCT Endoribonuclease L-PSP GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1051828..1052289 GB:FROM 1051828 GB:TO 1052289 GB:DIRECTION + GB:PRODUCT Endoribonuclease L-PSP GB:PROTEIN_ID AAZ21889.1 GB:DB_XREF GI:71062886 LENGTH 153 SQ:AASEQ MSYEDKIKELKLELPEARDPVGSYLASKQIGKMLFISGQISTAANGELIKGKVGKDLKTEDGYEAAKRCGLNIISQVKKACGNDLSKVKSCIKLTGFVNSTEDFTEQPKVINGASDLIVSVFGDSGMHTRAAVSTNSLPLGVSVEVDAIFELN GT:EXON 1|1-153:0| BL:SWS:NREP 1 BL:SWS:REP 17->149|Y854_PYRHO|6e-08|36.6|112/126| PROS 126->133|PS00369|PTS_HPR_HIS|PDOC00318| BL:PDB:NREP 1 BL:PDB:REP 4->153|3d01F|6e-29|46.2|143/155| RP:PDB:NREP 1 RP:PDB:REP 1->152|3d01A|4e-25|42.0|150/155| RP:PFM:NREP 1 RP:PFM:REP 20->152|PF01042|2e-11|39.5|114/119|Ribonuc_L-PSP| HM:PFM:NREP 1 HM:PFM:REP 19->150|PF01042|1.6e-18|25.4|114/121|Ribonuc_L-PSP| RP:SCP:NREP 1 RP:SCP:REP 4->152|2otmA1|7e-51|35.1|148/152|d.79.1.1| HM:SCP:REP 9->153|1qu9A_|7.8e-21|31.2|125/0|d.79.1.1|1/1|YjgF-like| OP:NHOMO 374 OP:NHOMOORG 280 OP:PATTERN ------------------------------------------------------------------11 -1111111222111-1111-1111121111111111123111111-1111112121111111111121111-----------1----------1-------2--21-2-----------------11111111111--------11------------------------------------------------------1--1------------1---1----------1-------------------------------------------------------------------------------------------------1--1-1----------------1--21111----11---------11111211111111111121111111111111112-11211111121-2222553754211221112111111111111111111111111-----------------------------111111-111-3222241111111411111113134452111112211121213112---------------------------------------------------------------------------------------1---------------1-1---------------------1----------------------------------------------------------------------------------------------------------------1--11----------222-----------------------------------1---------------111111-----------------------------------------------11 --------21------1---------------------------------------------------------------------------1---------------1---------------------------------------------------------------------1-------------2222221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 153 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHHHHHHHTTccccccccccEEEETTEEEEEEEccETTEEcccccccTTTccHHHHHHHHHHHHHHHHHHHHHHTTTcGGGccEEEEEEEEEEccTTcccHHHHHHHHHHHHHHHHcGGGccEEEEEEEEccGGGccEEEEEEEEcc PSIPRED ccHHHHHHHcccccccccccccccccEEEEccEEEEEEEccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHccccccEEEEEEEEEc //