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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21934.1
DDBJ      :             SpoU rRNA Methylase family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  841/915 : Eukaryota  59/199 : Viruses  0/175   --->[See Alignment]
c.116.1d.79.3
:247 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->235 1gz0H PDBj 3e-17 30.7 %
:RPS:PDB   100->240 3e5yA PDBj 1e-29 21.3 %
:RPS:SCOP  8->80 1gz0A2  d.79.3.3 * 1e-05 27.7 %
:RPS:SCOP  86->239 1gz0A1  c.116.1.1 * 7e-36 28.6 %
:HMM:SCOP  1->82 1gz0F2 d.79.3.3 * 1.4e-12 36.2 %
:HMM:SCOP  73->241 1v2xA_ c.116.1.1 * 2e-37 31.7 %
:RPS:PFM   7->83 PF08032 * SpoU_sub_bind 2e-07 46.4 %
:RPS:PFM   102->238 PF00588 * SpoU_methylase 6e-20 35.3 %
:HMM:PFM   99->237 PF00588 * SpoU_methylase 6.2e-38 31.9 138/142  
:HMM:PFM   7->80 PF08032 * SpoU_sub_bind 4.3e-11 39.4 66/76  
:BLT:SWISS 7->240 TRMHL_STAAE 5e-28 30.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21934.1 GT:GENE AAZ21934.1 GT:PRODUCT SpoU rRNA Methylase family GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1087091..1087834 GB:FROM 1087091 GB:TO 1087834 GB:DIRECTION + GB:PRODUCT SpoU rRNA Methylase family GB:PROTEIN_ID AAZ21934.1 GB:DB_XREF GI:71062931 LENGTH 247 SQ:AASEQ MNKSSFLIVGQHAVIEALRNPKRKVLKVFLTEESKKNIHRKNPKKNVLEDVKVYFKSKKELDKYTSKDQIMHGGYIAEVEHIDQPDLKEFIKGKNELTFVCIDEVTDPRNIGSLIRSASSFHIDGLIVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNLREKNFWVYGFDARGEKDFTEIKWEGKNVLLFGSEGFGMREHTGKYTDFFVKIDINKDVESLNISNSAAIVFHHLSYLKKNS GT:EXON 1|1-247:0| BL:SWS:NREP 1 BL:SWS:REP 7->240|TRMHL_STAAE|5e-28|30.0|230/248| BL:PDB:NREP 1 BL:PDB:REP 8->235|1gz0H|3e-17|30.7|218/242| RP:PDB:NREP 1 RP:PDB:REP 100->240|3e5yA|1e-29|21.3|141/156| RP:PFM:NREP 2 RP:PFM:REP 7->83|PF08032|2e-07|46.4|69/77|SpoU_sub_bind| RP:PFM:REP 102->238|PF00588|6e-20|35.3|136/143|SpoU_methylase| HM:PFM:NREP 2 HM:PFM:REP 99->237|PF00588|6.2e-38|31.9|138/142|SpoU_methylase| HM:PFM:REP 7->80|PF08032|4.3e-11|39.4|66/76|SpoU_sub_bind| GO:PFM:NREP 4 GO:PFM GO:0008168|"GO:methyltransferase activity"|PF08032|IPR013123| GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 2 RP:SCP:REP 8->80|1gz0A2|1e-05|27.7|65/76|d.79.3.3| RP:SCP:REP 86->239|1gz0A1|7e-36|28.6|154/166|c.116.1.1| HM:SCP:REP 1->82|1gz0F2|1.4e-12|36.2|80/87|d.79.3.3|1/1|L30e-like| HM:SCP:REP 73->241|1v2xA_|2e-37|31.7|161/191|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 1079 OP:NHOMOORG 901 OP:PATTERN -----------------------1-------------------------------------------- 11111222222111111----1--11-----111111111111-1111211222211111111112211111111---2111-11111221111111--21111-11-1----------------1111111121111111---1112212211111111111211111221111111111111111121111222222222222222212112222222211221111112121111111111111121111121222112121122222221112211111222211222212222121111111111112122222222222121222222222222222222212221121111121221111122-21-1-11112211211111111111111111-111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11-11111111111111111---------11111111-111111-11111111111111-111111121-12111111121111121111111111111111111-111-1------12222111111111111-11111111111111111111112222111111111111111112111111121122222222222111111111111111111111111111111111111111-1111211111111111111111111-11-111111111111111111111111111111111111111111111111122121212-21212212221211221121111111111--1 1-1111--1---111------1-1-1----------------------11----------1----------1--111-111---11-1---------------1-1--2------1-----------1-121-1-------------------1-11------2-1-----11-1-1112111-11--1-1111111-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 229 STR:RPRED 92.7 SQ:SECSTR #######EEcHHHHHHHHHHcGGGEEEEEEETTcccT##THHHHHHHHHHcEEEEEcHHHHHH##HcTTcccTTEEEEEccccGGGEEcccEEcTTcEEEEEEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGGGEEEEccTTcEEGGGccccTTcEEEEEcTTTcccHHTTccGGGEEEcccccccccccHHHHHHHHHHHH####### DISOP:02AL 246-247| PSIPRED cccccEEEEEHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHcccccccccEEEEEcccccccHHHHHHcccccEEEEEEccccccHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcHHHHccEEEEccHHHHHHHHHHcccEEEEEcccccccHHHccccccEEEEEccccccccHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHcc //