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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21949.1
DDBJ      :             SpoU rRNA Methylase family
Swiss-Prot:             

Homologs  Archaea  48/68 : Bacteria  458/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.116.1
:237 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->220 3ilkB PDBj 6e-20 31.3 %
:RPS:PDB   9->152 3dcmX PDBj 2e-21 16.0 %
:RPS:SCOP  5->152 1v2xA  c.116.1.1 * 2e-23 26.3 %
:HMM:SCOP  5->155 1v2xA_ c.116.1.1 * 3.9e-30 28.6 %
:RPS:PFM   9->150 PF00588 * SpoU_methylase 2e-10 31.6 %
:HMM:PFM   6->151 PF00588 * SpoU_methylase 9.7e-35 33.3 135/142  
:HMM:PFM   173->223 PF01366 * PRTP 0.00049 27.5 51/635  
:BLT:SWISS 6->230 Y1476_METJA 8e-23 31.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21949.1 GT:GENE AAZ21949.1 GT:PRODUCT SpoU rRNA Methylase family GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1099291..1100004) GB:FROM 1099291 GB:TO 1100004 GB:DIRECTION - GB:PRODUCT SpoU rRNA Methylase family GB:PROTEIN_ID AAZ21949.1 GB:DB_XREF GI:71062946 LENGTH 237 SQ:AASEQ MSFNNISFILHQPQLSENIGACARAVKNFNFKKLVIVKPKPIFPNDKILATSVGAKDLIINAKVHETLESAVKKVDYVVATSARFRNKNIKHINLDDLKKIDFNKKIAFLFGSEASGLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGAKYSKSKKVNLASKKDIQAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSKKG GT:EXON 1|1-237:0| BL:SWS:NREP 1 BL:SWS:REP 6->230|Y1476_METJA|8e-23|31.8|217/230| BL:PDB:NREP 1 BL:PDB:REP 5->220|3ilkB|6e-20|31.3|211/226| RP:PDB:NREP 1 RP:PDB:REP 9->152|3dcmX|2e-21|16.0|144/188| RP:PFM:NREP 1 RP:PFM:REP 9->150|PF00588|2e-10|31.6|136/143|SpoU_methylase| HM:PFM:NREP 2 HM:PFM:REP 6->151|PF00588|9.7e-35|33.3|135/142|SpoU_methylase| HM:PFM:REP 173->223|PF01366|0.00049|27.5|51/635|PRTP| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 1 RP:SCP:REP 5->152|1v2xA|2e-23|26.3|137/192|c.116.1.1| HM:SCP:REP 5->155|1v2xA_|3.9e-30|28.6|140/191|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 583 OP:NHOMOORG 509 OP:PATTERN --1-111111111111-------1----11-11111111111111111111111---111111111-- 111-------------------------------------------------------------------------------------------------------------------------------------111-----1-21111111-1111--1111--111-1-11111-111111111--1----------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------11-111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111------------111111111-11-----11111111111111111111111111111111111-111111--11-11--1-1111111111111111111-11-1-121-111111111-11111111111112-11-------------------------11221121111112111111111111111111---1111------22222212222221222-2222222222222222222112221112222222222222222222222221-111111111111--1111111111112122111111111-111111111111111111111111111111111111111111111111111111111111111111111111111---------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------22--------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 219 STR:RPRED 92.4 SQ:SECSTR #ccTGcEEEEcccccHHHHHHHHHHHHHTTccEEEEEcccHHHHHHHHHGTccccHHHHTTEEEEccHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHccccEEEEEccTTcccHHHHTTccEEccTTTTcccccccHHHHHHHHHHHHHHHTTTTTcccccccccHHHHHHHTTccccHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHTTc################# DISOP:02AL 159-178| PSIPRED ccccccEEEEEcccccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHccHHHHccEEEEccHHHHHHHccEEEEEEccccccccccccHHHHHHHHccccEEEEEccccccccHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcc //