[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ22027.1
DDBJ      :             sarcosine dehydrogenase
Swiss-Prot:             

Homologs  Archaea  37/68 : Bacteria  624/915 : Eukaryota  172/199 : Viruses  0/175   --->[See Alignment]
b.44.2c.3.1d.250.1
:814 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->810 1pj6A PDBj 3e-97 30.3 %
:RPS:PDB   22->386 1b3mA PDBj 6e-44 14.6 %
:RPS:PDB   366->470 3cd5D PDBj 1e-04 4.0 %
:RPS:PDB   471->541 3bk6A PDBj 9e-04 21.1 %
:RPS:SCOP  22->270 1ng3A1  c.3.1.2 * 1e-31 22.0 %
:RPS:SCOP  336->413 1pj5A2  c.3.1.2 * 6e-09 19.2 %
:RPS:SCOP  421->719 1pj5A4  d.250.1.1 * 1e-74 31.9 %
:RPS:SCOP  723->810 1v5vA1  b.44.2.1 * 1e-11 21.5 %
:HMM:SCOP  8->420 1pj5A2 c.3.1.2 * 1.9e-60 30.9 %
:HMM:SCOP  421->719 1pj5A4 d.250.1.1 * 2.7e-85 33.6 %
:HMM:SCOP  722->816 1pj5A1 b.44.2.1 * 5.9e-11 30.6 %
:RPS:PFM   22->349 PF01266 * DAO 6e-32 32.7 %
:RPS:PFM   486->695 PF01571 * GCV_T 2e-27 32.5 %
:RPS:PFM   706->801 PF08669 * GCV_T_C 1e-06 32.6 %
:HMM:PFM   10->368 PF01266 * DAO 2.7e-78 32.2 345/358  
:HMM:PFM   486->698 PF01571 * GCV_T 4e-60 35.9 209/211  
:HMM:PFM   706->801 PF08669 * GCV_T_C 7.5e-17 32.6 89/95  
:BLT:SWISS 2->774 SARDH_HUMAN e-124 33.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22027.1 GT:GENE AAZ22027.1 GT:PRODUCT sarcosine dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1167006..1169450) GB:FROM 1167006 GB:TO 1169450 GB:DIRECTION - GB:PRODUCT sarcosine dehydrogenase GB:PROTEIN_ID AAZ22027.1 GB:DB_XREF GI:71063024 LENGTH 814 SQ:AASEQ MSAVLPKSAKVVVIGGGVAGCSVAYHLAKYGWKDTILLERDQLTSGTTWHAAGLVGQLGASATITRLRKYSLNLYKELEKKTGLSTGLKQNGAITVASTPERLQELLRQATAAQLFDVNVESVNKQRIKELYPVINDDDILGGVYMPEDGQADPIGVTNVLAKAAKMEGAQIFEKTPVEKILVKDKKIVGVQTKFGKIDCEYVVIATGMWSRQIGEDIGVSIPLYPNEHFYIITEPLDKLPKNLPVLRDYNSCLYLKEDAGKMLVGIFEPNAKPAFKDKGVVPLDFSFGEFPDDFDHFEPYLEKSFQRLPMLETAGIRKFFSGPESFTPDTQYLLGETPEVNNLFTCCGFNSIGIASSGGAGRVTAEWMINGYMNEDLFSLDIKRFQKFHSSKKFIMERVTETLGDLYGMHWPYKQHNTSRNQRLLPYHEELKKEGACFGVSGEYERPMWYAKSNEKAEYKYSFDYQNWYPSVEFETKNTITNVGLFELSPFSKYEIKGENAHSELQRICTANIKNEIGRSTYTQMLNEGGGIETDLTVICIDKNHFRIISSAATRTHDKAHILKHLSPNLEFKDITDDLVCLGIFGPKSRNLISKISNDDFSNETFKFGYGKFVTLGSKKIWAQRLSYVGELGFELYIENKDAKEIYQLIIEEGKNHNLSHCGSHAMDTMRMESGFLHWGHDISPEENQYEAGLNFAISYKKETNFIGKESLLKIKDQKLNRRFIILSLKDSKPGTPLLLHEEPIYLEDKIIGRTTSGNYSFNYKKNLSFGYVSSIHSNEELSKMNLYIEVAKQKLPALVEIAPLKDKRARLL GT:EXON 1|1-814:0| BL:SWS:NREP 1 BL:SWS:REP 2->774|SARDH_HUMAN|e-124|33.9|764/918| SEG 11->20|vvvigggvag| SEG 352->362|sigiassggag| BL:PDB:NREP 1 BL:PDB:REP 22->810|1pj6A|3e-97|30.3|776/828| RP:PDB:NREP 3 RP:PDB:REP 22->386|1b3mA|6e-44|14.6|355/385| RP:PDB:REP 366->470|3cd5D|1e-04|4.0|101/416| RP:PDB:REP 471->541|3bk6A|9e-04|21.1|71/170| RP:PFM:NREP 3 RP:PFM:REP 22->349|PF01266|6e-32|32.7|309/354|DAO| RP:PFM:REP 486->695|PF01571|2e-27|32.5|206/211|GCV_T| RP:PFM:REP 706->801|PF08669|1e-06|32.6|89/94|GCV_T_C| HM:PFM:NREP 3 HM:PFM:REP 10->368|PF01266|2.7e-78|32.2|345/358|DAO| HM:PFM:REP 486->698|PF01571|4e-60|35.9|209/211|GCV_T| HM:PFM:REP 706->801|PF08669|7.5e-17|32.6|89/95|GCV_T_C| GO:PFM:NREP 4 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01266|IPR006076| GO:PFM GO:0004047|"GO:aminomethyltransferase activity"|PF01571|IPR006222| GO:PFM GO:0005737|"GO:cytoplasm"|PF01571|IPR006222| GO:PFM GO:0006546|"GO:glycine catabolic process"|PF01571|IPR006222| RP:SCP:NREP 4 RP:SCP:REP 22->270|1ng3A1|1e-31|22.0|241/276|c.3.1.2| RP:SCP:REP 336->413|1pj5A2|6e-09|19.2|75/305|c.3.1.2| RP:SCP:REP 421->719|1pj5A4|1e-74|31.9|298/315|d.250.1.1| RP:SCP:REP 723->810|1v5vA1|1e-11|21.5|79/89|b.44.2.1| HM:SCP:REP 8->420|1pj5A2|1.9e-60|30.9|304/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 421->719|1pj5A4|2.7e-85|33.6|298/315|d.250.1.1|1/1|Folate-binding domain| HM:SCP:REP 722->816|1pj5A1|5.9e-11|30.6|85/88|b.44.2.1|1/1|Aminomethyltransferase beta-barrel domain| OP:NHOMO 1941 OP:NHOMOORG 833 OP:PATTERN 112-22111111112111---1-131112-11----------------------33333331111--- 133-11-----111111----41122-----1333322781--1-132-11-5443121111511494121----------191-1111111-111---1-211121211--------------11111111111122222---27123222112111111111111221211111111111121-1111112344444444244434412222244412421111111113-11111111111111111111-----------------------------------------------------------------------11--1111111111-1221---1---11----11-2-11211112-2--1-11--111111-35241111113123452353446-331322214M2-H887A6BA9DBD661116C64245FDK22222222222-5--2-----------------------------81161-1243133333351---55AB2222-33671331--11541-11112236--113-23122222121111212-5-1111111111-1111111-1222233-----------------------------21-11171111111111121111112111---11222------12212231111111111-11-1111111111111111111112231111111111111111221122211-111111111111---111111121111136-----1---------2221213111315555554984844166611111111111111122221212311111111111111111-111111--------1-1-------------------------2221212111111 11--11--421-111222223413232------1111---------1111333311211111111-11-111111-111111-11111-1312112222111111--231G754667334353455393Lv41A6D2332643462523252274344437B25534347224541111K1111121222211221113 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 806 STR:RPRED 99.0 SQ:SECSTR ####ccTTccEEEEcccHHHHHHHHHHHHTTcccEEEEcccccccccccccccEEEEccccTTcTTHHHHHHHHHHHHHHHHHcccccEEcccEEEEEETTccHHHHHHHHHHHHHTcccEEEETHHHHHHcTTccccTTEEEEEETTcEEEEHHHHHHHHHHHHHHTTcEEEccccEEEEcccTTcEEEEEETTEEEEEEEEEEccGGGHHHHGGGGTEEcccEEEEEEEEEEcccHHTccEEEEEETTEEEEEEcccTTccEEEEEccccEEccTTTccccTTccTTccHHcTHHHHHHHHHHHHHcGGGcccEEEEEEEEEEEEcTTcccEEEEETTEEEEEEEEccTTccGGGHHHHHHHHHHHHHHcccccccGGGcTTcGHHHHTHHHHHHHHHHHHHHHTccGGGccccHHHHHHHHTccccHHHHHHHHHHHHTccccccccccccHHHHHHHHTcccccccGGGGGcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHEETTEEEEEEccHHHHHHHHHHHHHHHHHcEEEEcGGGEEEEEEEcTTHHHHHTTcccccccTTTccTTcEEEEEETTEEEEEEcccTTcccEEEEEEEHHHHHHHHHHHHHHHGGGTcEEEcHHHHHHHHHHTTccccTTTccTTccTTTTTcGGGccTTcccccTTTGGGTTcccTTccEEEEEEEETTccccccccccccEEEETTEEEEEEEEEEEETTTTEEEEEEEEETTccTTcGcccEEEEEETTEEEEEEEEccccccTT#### DISOP:02AL 1-4| PSIPRED ccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccEEEccEEEEEccHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHccccccccEEEEEEEccccEEcHHHHHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEEEccEEEEEEEEEEEccccHHHHHHHcccccEEEEEEEEEEEEccccccccccEEEEccccEEEEEEccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEccccccccccEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEccccEEEEEEcHHHHHHHHHHccccccccccEEEEEEEEcccccEEEEEEEEEEcccEEEEEEccccHHHHHHHHHHHcccccEEEEccHHEEEEEEEcHHHHHHHHHHccccccHHHcccEEEEEEEEccccEEEEEEcccccccEEEEEcHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHHHHcccccccccccHHccccHHccccccccccHHHHHHHHHHHccccEEEEEEEEcccccccHHHccccEEEccccEEEEEEEccccccccccEEEEEEccccccccccccEEEEEEccEEEEEEEEEccccccccccc //