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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ22047.1
DDBJ      :             probable transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  653/915 : Eukaryota  11/199 : Viruses  1/175   --->[See Alignment]
a.4.5b.149.1b.45.2c.94.1
:296 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->293 3hhgE PDBj 4e-23 25.9 %
:RPS:PDB   1->205 1b9nB PDBj 3e-31 10.7 %
:RPS:SCOP  1->102 1b9mA1  a.4.5.8 * 6e-26 19.6 %
:RPS:SCOP  75->187 1ylnA2  b.45.2.2 * 4e-22 15.2 %
:RPS:SCOP  217->287 1tg7A1  b.149.1.1 * 6e-04 7.8 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 2.2e-26 40.0 %
:HMM:SCOP  81->292 1uthA_ c.94.1.1 * 1.6e-34 24.2 %
:RPS:PFM   5->62 PF00126 * HTH_1 1e-14 62.1 %
:RPS:PFM   89->287 PF03466 * LysR_substrate 3e-04 25.0 %
:HMM:PFM   88->288 PF03466 * LysR_substrate 3.6e-34 25.6 195/209  
:HMM:PFM   3->62 PF00126 * HTH_1 2.7e-25 60.0 60/60  
:BLT:SWISS 4->195 YAFC_ECOLI 7e-25 31.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22047.1 GT:GENE AAZ22047.1 GT:PRODUCT probable transcriptional regulator GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1185434..1186324) GB:FROM 1185434 GB:TO 1186324 GB:DIRECTION - GB:PRODUCT probable transcriptional regulator GB:PROTEIN_ID AAZ22047.1 GB:DB_XREF GI:71063044 LENGTH 296 SQ:AASEQ MDWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTENGEYLFKTAHDVISKLKEVESTLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMTLNPEIEIELIFEDRELDLSTRQADIGIFMRRPKQLNYIQKKLVDLKYYIYGSNKYLEKHGMPKTISDLNKHKFISFGKGAPSPVYDPDWALKLGIKDGKKRKPVMKVNSVMGLLLAVEAGVGLAALPEYLVSNSNNIIKVLPSSEGPITEAHFVYPQSLKNTARITAFRNFLFSKIGDWKS GT:EXON 1|1-296:0| BL:SWS:NREP 1 BL:SWS:REP 4->195|YAFC_ECOLI|7e-25|31.2|192/304| SEG 225->241|vmglllaveagvglaal| BL:PDB:NREP 1 BL:PDB:REP 4->293|3hhgE|4e-23|25.9|286/297| RP:PDB:NREP 1 RP:PDB:REP 1->205|1b9nB|3e-31|10.7|197/245| RP:PFM:NREP 2 RP:PFM:REP 5->62|PF00126|1e-14|62.1|58/60|HTH_1| RP:PFM:REP 89->287|PF03466|3e-04|25.0|192/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 88->288|PF03466|3.6e-34|25.6|195/209|LysR_substrate| HM:PFM:REP 3->62|PF00126|2.7e-25|60.0|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 3 RP:SCP:REP 1->102|1b9mA1|6e-26|19.6|102/122|a.4.5.8| RP:SCP:REP 75->187|1ylnA2|4e-22|15.2|112/115|b.45.2.2| RP:SCP:REP 217->287|1tg7A1|6e-04|7.8|64/97|b.149.1.1| HM:SCP:REP 1->112|1b9mA1|2.2e-26|40.0|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 81->292|1uthA_|1.6e-34|24.2|207/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 8867 OP:NHOMOORG 667 OP:PATTERN -------------------------------------1---------------1-------------- 334-11-1222---211----2---4------122216BC---11-11-11-242--3----1-3262211-111---11141111111111-1-------4---211-2---------------1--------1-35511---219446554342211111145386542111111111111--------42B888889A857678A732889DA791339331345343DH-2223222222222254426-212451-212663333-23--2212---------------------------------------------4359444445434417442222631-15-32-44431111612121-13412H44711111R8dQT65BAE7D7CCBCB9C9ACT-GMOEDaHOIp81*ddTflW**zkjXTAA9CLUGAGKDRV98999999FHF9A66B-----------------------------11DIB6HhZJm******gXabX****ggehKl***fw*m-2YUZGCKFGwFdH*F9RC4869YA33333334534KF72312122119223-11-234331784BAK-21--1-------------------1166SKNBABi8FFAEMNOKBKMLHIGMJOOIYQ---3527------JCJO3MJGGHFGFEEEE-HFFFJCBEHDHEJEEFFEAhrfQN6BAC6D9EBDBDDBACA9BsA99899A5-HABBCCCABCBB---4-2--2233344WKm877C4K134435322VUUVXDI6BAc9sumsfz*xWhkmnGcXe6743377376LNNeJJJJJOSTMKXaHIJIG67831111-21----------------------------------------------------251 -------------1---------------------------------------------------------------------------------------------------------------------------------1--------------4----3------8--5-1--------11--9-----7---- --------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------- STR:NPRED 293 STR:RPRED 99.0 SQ:SECSTR EcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHHEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHccHTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcGGGcEEEccHHHHTTccEEEEEEEcccEEEEEEEcTTccEEEEEEEGHHcEEHHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGccTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHHHHTTT### DISOP:02AL 82-86, 295-296| PSIPRED ccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEcHHHccEEEEEEEccccccccEEEEEccccEEEEEcHHHHHcccccccHHHHccccEEEEcccccccccccccccccccEEEEEEcccEEEccHHHHHHHHHHcccEEEHHHHHHHHccccEEEccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHcc //