[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ22052.1
DDBJ      :             Winged helix DNA-binding
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:323 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  239->289 1mkmA1  a.4.5.33 * 6e-04 16.3 %
:HMM:PFM   89->122 PF08220 * HTH_DeoR 5.2e-07 38.2 34/57  
:HMM:PFM   240->279 PF09339 * HTH_IclR 0.00045 28.9 38/52  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22052.1 GT:GENE AAZ22052.1 GT:PRODUCT Winged helix DNA-binding GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1188881..1189852) GB:FROM 1188881 GB:TO 1189852 GB:DIRECTION - GB:PRODUCT Winged helix DNA-binding GB:PROTEIN_ID AAZ22052.1 GB:DB_XREF GI:71063049 LENGTH 323 SQ:AASEQ MKKLLPEISKQIRSKNIREVIEKNFVSIMPVWVPLQLAWVNNVYRTFHDYEKFMIIMHLLMNTFEAYSKNFVKLNYEEYFDQNEVEIETINVIEISKSLNIPKETTRRKINELEEIGVIKRVNRKIIIDRNTWPSIKPEETVKRMTRFLSTLSNVCVEEGIISEPFSSERLTETSKEYFSFVWKLYYEMQMPMLLGYKKVYGDLESFHIHGICLVNHALHSKKNDNSEMNKEFYLEKYFFAEQKDEVGVNAMSISDITGIPRATVIRKLNILLKQKFLTIDSKKHYSITGVYQKKILDVQKNTLNNLSKFSARIYNLSLMKDN GT:EXON 1|1-323:0| SEG 83->95|neveietinviei| HM:PFM:NREP 2 HM:PFM:REP 89->122|PF08220|5.2e-07|38.2|34/57|HTH_DeoR| HM:PFM:REP 240->279|PF09339|0.00045|28.9|38/52|HTH_IclR| RP:SCP:NREP 1 RP:SCP:REP 239->289|1mkmA1|6e-04|16.3|49/75|a.4.5.33| OP:NHOMO 2 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-8, 220-231, 322-323| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHcccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHEEEHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccEEEEEHHHccccHHHHHHHHHHHHHHHHHEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcc //