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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ22067.1
DDBJ      :             probable dioxygenase alpha chain
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  271/915 : Eukaryota  53/199 : Viruses  0/175   --->[See Alignment]
b.33.1d.129.3
:397 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->229 3en1A PDBj 2e-21 28.5 %
:RPS:PDB   27->391 2ckfE PDBj 2e-42 19.5 %
:RPS:SCOP  27->171 1eg9A1  b.33.1.2 * 2e-27 24.6 %
:RPS:SCOP  177->393 2b1xA2  d.129.3.3 * 3e-20 12.9 %
:HMM:SCOP  10->173 2b1xA1 b.33.1.2 * 9.7e-41 34.2 %
:HMM:SCOP  175->397 1wqlA2 d.129.3.3 * 9e-47 26.0 %
:RPS:PFM   76->134 PF00355 * Rieske 8e-08 42.4 %
:HMM:PFM   55->137 PF00355 * Rieske 7.9e-20 35.4 82/97  
:HMM:PFM   213->235 PF00848 * Ring_hydroxyl_A 9.3e-07 43.5 23/271  
:HMM:PFM   37->44 PF08252 * Leader_CPA1 0.00092 62.5 8/24  
:BLT:SWISS 24->374 YEAW_ECOLI 3e-31 26.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22067.1 GT:GENE AAZ22067.1 GT:PRODUCT probable dioxygenase alpha chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1200049..1201242) GB:FROM 1200049 GB:TO 1201242 GB:DIRECTION - GB:PRODUCT probable dioxygenase alpha chain GB:PROTEIN_ID AAZ22067.1 GB:DB_XREF GI:71063064 LENGTH 397 SQ:AASEQ MSENLKNLQLSKILDLEKIRVVGNPIEKAHGLPNECYTSSDYLSIERERIFKDKWTVIGVGSSVPNVGDAQPYNLLGIPLIILRDKEKKIRVFHNVCSHRGFKLLDEPCALKNVLRCPYHSWSYDFDGKLVATPHIGGLNVHETEKFDKSSSNLKEVKTKIWMDIIFININSNELEFDEYIKPLEERWSKFISKEDQKLLKHSKDHGYFSLDVKCNWKFAIENYCESYHLPWIHPELNKVSNISDHYHIQGLPNRFAGQGTNKYDQPVKGNQSFNNFPNWPKDLFKKAEYIALFPNVMIGLHVDHFYVFWLEPKSFSETKEHLTMYYVGDDSANGSEFTEMRKKNAEFWKEVMIEDIKAIEGMQEGRNSPVYNGGNFSPIMDNPTHEFHKWVATNLV GT:EXON 1|1-397:0| BL:SWS:NREP 1 BL:SWS:REP 24->374|YEAW_ECOLI|3e-31|26.8|321/374| BL:PDB:NREP 1 BL:PDB:REP 27->229|3en1A|2e-21|28.5|193/424| RP:PDB:NREP 1 RP:PDB:REP 27->391|2ckfE|2e-42|19.5|354/433| RP:PFM:NREP 1 RP:PFM:REP 76->134|PF00355|8e-08|42.4|59/95|Rieske| HM:PFM:NREP 3 HM:PFM:REP 55->137|PF00355|7.9e-20|35.4|82/97|Rieske| HM:PFM:REP 213->235|PF00848|9.3e-07|43.5|23/271|Ring_hydroxyl_A| HM:PFM:REP 37->44|PF08252|0.00092|62.5|8/24|Leader_CPA1| GO:PFM:NREP 3 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00355|IPR017941| GO:PFM GO:0051537|"GO:2 iron, 2 sulfur cluster binding"|PF00355|IPR017941| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00355|IPR017941| RP:SCP:NREP 2 RP:SCP:REP 27->171|1eg9A1|2e-27|24.6|142/154|b.33.1.2| RP:SCP:REP 177->393|2b1xA2|3e-20|12.9|209/279|d.129.3.3| HM:SCP:REP 10->173|2b1xA1|9.7e-41|34.2|161/0|b.33.1.2|1/1|ISP domain| HM:SCP:REP 175->397|1wqlA2|9e-47|26.0|215/0|d.129.3.3|1/1|Bet v1-like| OP:NHOMO 865 OP:NHOMOORG 331 OP:PATTERN -------111111-----------1------------------------------------------- -11-1--1112---1A811-1K--66111111FHIM1-FC-31F--------213-------2--131--------------1-----------------------------------------------------11111----2----21--1-----------3--1---1-------1--------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------24111------11-2------1-11111111111-11111311-35-211122322322111-11251--1225111111112---1-----------------------1--------1-KP1-3642454566654444665543441595H26421122322221242-6611--21211-------111-33-----------------------------1-----------------------------------1-1-------1------1--------------------------222-2---12-12222--2222-2222222221--12------------------2111112---1-111111111---------1111---24---------------5452422-1-2-44443432135421211--------------------------1-1--112------------11------------------------------------------------- ---------------212133316342212212----------111----24A6111------1-----1--1-1------11111-----11---------------426-------------------------------------------------------------------15---1211-1111------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 373 STR:RPRED 94.0 SQ:SECSTR ####################HHHHHHTTTTEEEGGGGTcHHHHHHHHHHTTTTccEEEEEGGGcccTTEEEEEEETTEEEEEEEcTTccEEEEEcccTTTccccccccEEEcccEEcTTTccEEcTTccEEEcTTTTTTTTTcEEcccGGGccccEEEEEEETTEEEEEccTTcccHHHHHGGGHHHHHHHHTTTcccEEEEEEEEEEEEEEEcccTHHHHHHHHHcTTHHHHTHHHccEEEEcTTccEEEETTcGGGGcccHHHHHHHHHHHHHHHcHHHHHHHTcEEEEEETTTEEEEETTcEEEEEEEEEccTTcEEEEEEEEEETTETTccHHHHHHHHHHHHHHHcTGGGGHHHHHHHHHGGGcHHHHccEEEccTTTTcEEcccccc#### DISOP:02AL 1-5, 8-9| PSIPRED cccccccHHHHccccHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHHcccEEEEEHHHccccccEEEEEEcccEEEEEEccccEEEEEcccccccccEEcccccccccEEEEEccccEEcccccEEEccccccccccccccccHHHccccccEEEEEccEEEEEccccccccHHHcccHHHHHHHHHccccccccccEEEcEEEEEEEcccHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHccccccccccccccHHHHcccccccccccccEEEEEEcccEEEEEcccEEEEEEEEEcccccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcc //