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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ22069.1
DDBJ      :             putative aminomethyltransferase protein
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  607/915 : Eukaryota  134/199 : Viruses  0/175   --->[See Alignment]
b.44.2d.250.1
:452 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   83->438 1wosA PDBj 9e-28 29.7 %
:RPS:SCOP  43->328 1v5vA2  d.250.1.1 * 5e-47 26.4 %
:RPS:SCOP  342->438 1v5vA1  b.44.2.1 * 5e-10 26.7 %
:HMM:SCOP  41->328 1pj5A4 d.250.1.1 * 8.1e-63 30.7 %
:HMM:SCOP  332->449 1vloA1 b.44.2.1 * 2e-09 30.6 %
:RPS:PFM   102->302 PF01571 * GCV_T 6e-30 33.5 %
:RPS:PFM   318->394 PF08669 * GCV_T_C 2e-06 45.5 %
:HMM:PFM   100->303 PF01571 * GCV_T 2.2e-42 31.8 198/211  
:HMM:PFM   318->435 PF08669 * GCV_T_C 4.3e-11 38.0 92/95  
:BLT:SWISS 79->438 GCST_SACEN 2e-33 31.8 %
:PROS 260->270|PS00626|RCC1_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22069.1 GT:GENE AAZ22069.1 GT:PRODUCT putative aminomethyltransferase protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1202064..1203422 GB:FROM 1202064 GB:TO 1203422 GB:DIRECTION + GB:PRODUCT putative aminomethyltransferase protein GB:PROTEIN_ID AAZ22069.1 GB:DB_XREF GI:71063066 LENGTH 452 SQ:AASEQ MSNEFDYTKLNHVTSVDQSDREVPYNLRQSGPTKVEMLISTRVRKSPYWHLSMQAGCWRATVYNRIYHPRGYVKPEDGGAMVEYEAIKNHVTMWNVAVERQIRVKGPDAEKFTDYVITRDATKISPMRARYVILCNAYGGVLNDPILLRISKDEFWFSLSDSDIGMYLQGVNADGRFDCTIEEIDVCPVQIQGPKSKALMKDLIGDQVDLDNMPFYGLAEAKVGGRDCVISQSGFSGEAGYEIYLREATKYADDMWNAVLAAGKKHSLMVIAPAHHRRIQAGILSWGQDMDHQHNPFQCNLGYQVSLSGKGEWNKKTDYVGKAALEKMGADLKAGQKPYKLQLVGLELGGKPIEEYAPDFWLVSPESGGDPVGFITSPWYHPEKGQNIAMGYVPFDGTLNANGFPKGKVGTKYKVHLPAKYSDTPGTPVDAVVVDIPFTESFNANTREVVKG GT:EXON 1|1-452:0| BL:SWS:NREP 1 BL:SWS:REP 79->438|GCST_SACEN|2e-33|31.8|324/367| PROS 260->270|PS00626|RCC1_2|PDOC00544| BL:PDB:NREP 1 BL:PDB:REP 83->438|1wosA|9e-28|29.7|316/361| RP:PFM:NREP 2 RP:PFM:REP 102->302|PF01571|6e-30|33.5|197/211|GCV_T| RP:PFM:REP 318->394|PF08669|2e-06|45.5|66/94|GCV_T_C| HM:PFM:NREP 2 HM:PFM:REP 100->303|PF01571|2.2e-42|31.8|198/211|GCV_T| HM:PFM:REP 318->435|PF08669|4.3e-11|38.0|92/95|GCV_T_C| GO:PFM:NREP 3 GO:PFM GO:0004047|"GO:aminomethyltransferase activity"|PF01571|IPR006222| GO:PFM GO:0005737|"GO:cytoplasm"|PF01571|IPR006222| GO:PFM GO:0006546|"GO:glycine catabolic process"|PF01571|IPR006222| RP:SCP:NREP 2 RP:SCP:REP 43->328|1v5vA2|5e-47|26.4|269/310|d.250.1.1| RP:SCP:REP 342->438|1v5vA1|5e-10|26.7|75/89|b.44.2.1| HM:SCP:REP 41->328|1pj5A4|8.1e-63|30.7|277/315|d.250.1.1|1/1|Folate-binding domain| HM:SCP:REP 332->449|1vloA1|2e-09|30.6|98/100|b.44.2.1|1/1|Aminomethyltransferase beta-barrel domain| OP:NHOMO 1178 OP:NHOMOORG 759 OP:PATTERN --1-1-------------------411-3--1----------------------11111111111--- 121-11-----11111111-131131111111222211441--1-12--11-4322111111211372111----------161----1111-111---1-211111111--------------11111111111111111---1111-1111111111111111111111-111111--1-111-1111111111111111111111111111111111111111111111-11111111111111111111-----------------------------------------------------------------------11--1111111-1--111----1---11----22-1-11111111-1--1-1211111111-21211111112111221222213-231322312F2-733365555788561-1363112176B111111112---41-1-----------------------------81111-112212222222211122362222122332221--11331---111--1--111-2-11-111111111-11-1--111111111-1111111-1111121---------------------------1111-1-141111111111111111111111---11112------11111111111111111-11-1111111111111111111111111111111111111111111111111-111111111111---111111111111-12---------------------1111313333333662423144411111111111111-11111111111111111111111111-111111--------1-1-------------------------1111111111-11 ----11--42--1112121111-1111-------------------11112222---1111111-------1-1--111-----111--1-111121-11-1111--2-16233334-111133441228P3-437-2113123-11-2-2-1321123351-4131224213321111K111112122121121---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 400 STR:RPRED 88.5 SQ:SECSTR #############################HTTccGGGGccccccTTHHHHHHTTcTTEEEEEE###cccEEEEcccTTcHHHHHHHHHHccEEEEcTTcEEEEEEcTTHHHHHHHHcccccTTccTTEEEEEEEEcTTccEEEEEEEEEEETTEEEEEEcGGGHHHHHHHHHTTcTcccEEEEcGEEEEEEEcTTHHHHHGGGcccccccTTccTTcEEEEEETTEEEEEEccccccccEEEEEEEGGGGGHHHHHHHHHHHHHHcEEccHHHHHHHHHHTTccccTTTccTTccGGGGTcGGGccTTcHHcTTcccccTTHHHHHTTHHHHHHHHHTccEEEEEEEEcccccccTTcEEEEEcTTETTEEEEEEEEEEEETTTTEEEEEEEEEGG########TTccTTcEEEEEETTEEEEETTEEEEEEEEcccccc############ DISOP:02AL 1-4, 447-452| PSIPRED cccccccHHHccEEEccccccccccccccccccccccccccccccccHHHHHHHcccEEEccccEEEccccccccccccHHHHHHHHHHccEEEEccccEEEEEEcHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEEEEcccEEEEEEcccHHHHHHHHHHHHcccEEEEEEccEEEEEEEcHHHHHHHHHHccccccHHHccccEEEEEEEccccEEEEEEcccccccEEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHccHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEccccccccccEEEEEEEccccccccccHHcccccEEEEEEccccccccccEEEEEEEEccccccccccccHHccc //