[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ22093.1
DDBJ      :             short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  878/915 : Eukaryota  194/199 : Viruses  1/175   --->[See Alignment]
c.2.1
:251 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   6->248 2c07A PDBj 4e-32 34.1 %
:RPS:PDB   2->251 2ae1A PDBj 3e-43 24.3 %
:RPS:SCOP  9->248 1pwxA  c.2.1.2 * 6e-48 19.1 %
:HMM:SCOP  1->246 1zemA1 c.2.1.2 * 2.1e-62 34.9 %
:RPS:PFM   8->172 PF00106 * adh_short 2e-14 30.4 %
:HMM:PFM   8->170 PF00106 * adh_short 4.4e-23 25.8 155/167  
:BLT:SWISS 8->247 FABG_BUCBP 8e-35 37.7 %
:PROS 142->170|PS00061|ADH_SHORT

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22093.1 GT:GENE AAZ22093.1 GT:PRODUCT short chain dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1224047..1224802 GB:FROM 1224047 GB:TO 1224802 GB:DIRECTION + GB:PRODUCT short chain dehydrogenase GB:PROTEIN_ID AAZ22093.1 GB:DB_XREF GI:71063090 LENGTH 251 SQ:AASEQ MKLNFKGKTAVITGASGGMGLEMSKKLSQNNISVLMLDLKSPSKEFLDNNKKCEFKKVDVTNFNKLKVYIDNFYKKHKRLDYLVNTTGVLWFDKDVSAVNIDSNVWDKVFEINLKSMMYLSKIIVPKMIKNKFGSMVHISSIDALSGDDKPQDAYGASKAAMIRLSKSFAIQFASNKIRSNIILPGPIDTGMQIRWKKNPNTKKNLEKFIPLNKVGKPEDISNASLFLLSDQADYITGTELIVDGGLTAKP GT:EXON 1|1-251:0| BL:SWS:NREP 1 BL:SWS:REP 8->247|FABG_BUCBP|8e-35|37.7|231/245| PROS 142->170|PS00061|ADH_SHORT|PDOC00060| BL:PDB:NREP 1 BL:PDB:REP 6->248|2c07A|4e-32|34.1|232/246| RP:PDB:NREP 1 RP:PDB:REP 2->251|2ae1A|3e-43|24.3|243/252| RP:PFM:NREP 1 RP:PFM:REP 8->172|PF00106|2e-14|30.4|161/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 8->170|PF00106|4.4e-23|25.8|155/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 9->248|1pwxA|6e-48|19.1|236/252|c.2.1.2| HM:SCP:REP 1->246|1zemA1|2.1e-62|34.9|241/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 13402 OP:NHOMOORG 1129 OP:PATTERN 22112359B9B9A996191421218227455612---------21133--422-23123132853125 EHT2T1-333A24-PrhFF-Fi22T*FEFFFOnsxvPm**5c6*HGB34A81JFF64711BDP2CCQQQNC11112121187O11333877628221--74P5GEi9T6I11111111121111465267322674ABBDE222GA78DA43611222115322719B9N6112132313213C9689551E8OGGHGHJHJGIIHIJHNGMMHMHIH9GGMOFB988897JZ866666546666665989DB72B28A251218B5599687787787767587845544444454444565565665666435522255594358D5554444547945526866331157222A7123325333355533A2FaFFL12222H6*df68BXPUTMKLLKJJLJLLR-FIPGEgGMUlV1wccOgak**yihRXBJDKGTMFMOFCG66666666OPLB59AA22112222112322331221222121111ACk*E8HbUNUuglnopNONOMYYnqRQQQAQ*T*P*ha47LLGE7HBBNJXIhj8G54749841221111347GC67J45412111422224763D53846778GN3423343332343332234234324226677699FD7MC3687798DC9877B68786E1-23348111111BCDA5G7ADDBAAAAAB-EABABAAABBDAD9ABBADJOID689B9678899899878788P898887B11799999999999111534233BBAB38HMH111527122221351IJKMK6G397I8MNJMDMOaFHHNJFMJK6443364343345C54554A8688GGFCHBB89B65552236997666--------1-4------1-3-1------31------3342166676392 1211AAA-311-5BChqgWjZhWwotjNOCIGIIJIGPKMJOOIHIWUWehx**OUSJILJLCBL4874D54FAB563668CCEHD19-LbGqGRGHEFCEDEIHD-7DB*MSHFH952214A5HA1B1HmB-9AB4353D35E717446A24F8A8IMZVOBWKHHK7COFRLK5672G4327JEONsceCBBNDED8 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 251 STR:RPRED 100.0 SQ:SECSTR cTTccTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEEcccccccccGGGccHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTccEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEccccccTTTccHHHHHHHHHHHHTccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGcc PSIPRED ccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEcccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHccccccEEEEcccccccc //