[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ22106.1
DDBJ      :             putative aminomethyltransferase protein
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  645/915 : Eukaryota  182/199 : Viruses  0/175   --->[See Alignment]
b.44.2d.250.1
:775 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   177->354 3di4B PDBj 3e-04 28.1 %
:BLT:PDB   413->766 1yx2B PDBj 3e-46 41.1 %
:RPS:PDB   497->601 1cw1A PDBj 7e-05 18.4 %
:RPS:SCOP  405->683 1pj5A4  d.250.1.1 * 3e-63 27.4 %
:RPS:SCOP  686->775 1v5vA1  b.44.2.1 * 3e-24 31.0 %
:HMM:SCOP  394->685 1pj5A4 d.250.1.1 * 7e-76 36.4 %
:HMM:SCOP  686->777 1v5vA1 b.44.2.1 * 1.3e-23 47.2 %
:RPS:PFM   177->346 PF09347 * DUF1989 2e-18 35.8 %
:RPS:PFM   444->659 PF01571 * GCV_T 2e-37 41.2 %
:RPS:PFM   670->761 PF08669 * GCV_T_C 8e-13 48.3 %
:HMM:PFM   443->660 PF01571 * GCV_T 4.6e-61 38.8 206/211  
:HMM:PFM   178->346 PF09347 * DUF1989 6.8e-50 35.0 163/167  
:HMM:PFM   670->761 PF08669 * GCV_T_C 3.4e-23 49.4 89/95  
:BLT:SWISS 194->370 YCGI_BACSU 2e-13 27.5 %
:BLT:SWISS 413->770 GCST_BACCN 8e-59 41.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22106.1 GT:GENE AAZ22106.1 GT:PRODUCT putative aminomethyltransferase protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1236434..1238761 GB:FROM 1236434 GB:TO 1238761 GB:DIRECTION + GB:PRODUCT putative aminomethyltransferase protein GB:PROTEIN_ID AAZ22106.1 GB:DB_XREF GI:71063103 LENGTH 775 SQ:AASEQ MLHTSKDIRSPGLRTLPPGVERYFVRGGGLSIIEVLPEDKIEIINEEGKQICEIIVFNSKGKSDLSILNLKENSNADFSKKTISNDEKISKILKKKNLNLSNAKASIIFNDDCLMGEKITLTSKDKCIVMIAAPGDAMNVHEQNPPTDLTIYLNKAKFIETDEQFILPDPLSDPIIEQLVKRRTAETYSVKAGEYIQIIDPGGRQCSDFLAFDTQKLNDGIESIIDDKTTRTFMGGAYPGPGLFSKFYDGDHEAMIEVVRDTVGRHDTFNLACTSKYYEDMGYMGHINCTDNFNNRLDKYDINSRKSWSAINLFFNTAIDANNVASFDEPWSRPGDYVLFRALKDLTCISSACPCDVDAANGWNPTDIFVRTYSKEKKYSKAIAFRMKTDSEPKLTQETGFHKKTSELTRNFVEYKGFWLANNFTNSGTIKEYTACRESAIATDLSPLRKFEILGPDAENLMQYTLTRNVKKLSIGQVVYTAMCYENGCMLDDGTLFKLGQDNFRWIGGDEYSGEWLKEQAKKKNYKVWIKSATDHIHNIAVQGPNSRKILEKFVWTAPIQPSITELEWFRFNIARIDHETGTPIVISRTGYTGELGYEIWCHPKDAAEVWDKVWEAGKEFDITPLGLEALDMVRIEAGLIFYGYEFDDQTDPFEAGIGFTVPLKTKEDDFIGKEELIKRKANPQKKLVGLELVGHEPALHGDCVHVGRGQVGVITSGMLSPKLGKNIALCRIDVKYSEIGTEVEIGKLDGHQKRIGAKVVPFPFYDPTKSRVRA GT:EXON 1|1-775:0| BL:SWS:NREP 2 BL:SWS:REP 194->370|YCGI_BACSU|2e-13|27.5|171/198| BL:SWS:REP 413->770|GCST_BACCN|8e-59|41.8|340/366| SEG 88->106|kiskilkkknlnlsnakas| BL:PDB:NREP 2 BL:PDB:REP 177->354|3di4B|3e-04|28.1|171/268| BL:PDB:REP 413->766|1yx2B|3e-46|41.1|331/355| RP:PDB:NREP 1 RP:PDB:REP 497->601|1cw1A|7e-05|18.4|98/415| RP:PFM:NREP 3 RP:PFM:REP 177->346|PF09347|2e-18|35.8|162/167|DUF1989| RP:PFM:REP 444->659|PF01571|2e-37|41.2|204/211|GCV_T| RP:PFM:REP 670->761|PF08669|8e-13|48.3|89/94|GCV_T_C| HM:PFM:NREP 3 HM:PFM:REP 443->660|PF01571|4.6e-61|38.8|206/211|GCV_T| HM:PFM:REP 178->346|PF09347|6.8e-50|35.0|163/167|DUF1989| HM:PFM:REP 670->761|PF08669|3.4e-23|49.4|89/95|GCV_T_C| GO:PFM:NREP 3 GO:PFM GO:0004047|"GO:aminomethyltransferase activity"|PF01571|IPR006222| GO:PFM GO:0005737|"GO:cytoplasm"|PF01571|IPR006222| GO:PFM GO:0006546|"GO:glycine catabolic process"|PF01571|IPR006222| RP:SCP:NREP 2 RP:SCP:REP 405->683|1pj5A4|3e-63|27.4|270/315|d.250.1.1| RP:SCP:REP 686->775|1v5vA1|3e-24|31.0|87/89|b.44.2.1| HM:SCP:REP 394->685|1pj5A4|7e-76|36.4|283/315|d.250.1.1|1/1|Folate-binding domain| HM:SCP:REP 686->777|1v5vA1|1.3e-23|47.2|89/0|b.44.2.1|1/1|Aminomethyltransferase beta-barrel domain| OP:NHOMO 1623 OP:NHOMOORG 860 OP:PATTERN 111-111111111111--------41123-12----------------------11111111111--- 132121-1---11131111-1311331111113333225511111131-21-5542111111412673111----------161----1111-111---2-212111111--------------11111111111111111---1211121111111111111111211111111111111111111111121211111111111111111112211111111111111111111111111111111111111-----------------------------------------------------------------------11--1111111-1--211----1---11----22-1-11111111-1--1-1211111111151311112223211231232223-553563523J4-C55586889AAB671115A54344ECK2122222231115112-----------------------------81231-112212333322211122482222122482421--113311111111-3-1112-31111111112221121-2-1111111111-1111111-1111122-----------------------1---111112-2412111111111111111111111--11223------11121111111111111-11-1111111111111111121221121111111111111111111111111-211111111111---111111111112122---------------11111-1111323333334673433255511111111121111-11111111111111111111111111-111111--------1-1-------------------------1111111111111 -1--11--421-11123322221332211111111111111-11111111332311111111111-11-111111-111111-11111-1313112111111111--221B544545-22333355142Ff4166A-32262244223224-163334536315342347224431111K1111121232211221114 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 553 STR:RPRED 71.4 SQ:SECSTR ################################################################################################################################################################################EEEEcTTcEEEEEEcTTcEEEEEEccccccEEE###EEEETTEEEEEccHHHHHHHHcccccTTcEEEccT###TTccEEEEEEETTTTEEcccccc#cHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcTTTccEEEcccccTTcEEEEEEcccEEEEEEEcT######################################cccccccTTHHHHHHTTcEEEEETTEEEEEEcccccHHHHHHHHHHccEEEEcTTcEEEEEEcTTHHHHHHHHHcccGGGccTTEEEEEEEEcTTccEEEEEEEHHTTccccEEccHHHHTTccccHHHHHHHHcEEEEcccccccccccccHHHHHHTTccEEEEEEEcccTTcccTcEEEEccccGGGcEEEEEEEccccGcEEcTTEEGGGHHHHHHHHHHHHGGGTcEEEcHHHHHHHHHHTTccccTTTccTTccTTTTTcGGGccTTccccccTTHHHHHHHHHHccEEEEEEEccccccccTTcEEEETTEEEEEEEEEEEETTTTEEEEEEEEEGGGccTTcEEEEEEEEETTEEEEEEEEccccccTTTTTTc# DISOP:02AL 1-6, 85-86, 89-91, 774-775| PSIPRED ccccccccccccccccccccEEEEEEcccEEEEEEEcccEEEEEEcccccEEEEEEEcccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHccEEEEEccccccccEEEEEEEEcEEEEEEcccHHcccccccccccEEEEEEccccccccccccccccHHHHHHHEEEccccccEEEEccccEEEEEEcccccEEEEEEEEccccccccccccccccHHHHcccEEEccccccccccccccEEEEEEEccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHccccccccccEEEEEccEEccccEEEEcccccccccEEEEEEcccEEEEEEccccccccccccccccEEEEEEEccccccccEEEEccccccccccccccHHHHHHHcccEEEEcccEEcccEEccHHHHHHHHHHHHccEEEEccccEEEEEEcHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEEEEcccEEEEEEcHHHHHHHHHHHHHccccEEEEEEccccEEEEEEEcHHHHHHHHHHHccccccccHHHccccccEEEEEEEEcccEEEEEEEcccccccEEEEEcHHHHHHHHHHHHHcccccccEEEcHHHHHHHHHHcccccccccccccccHHHccHHHHccccccccccHHHHHHHHHHccccEEEEEEEEccccccccccEEEccccEEEEEEEccccccccccEEEEEEEccccccccEEEEEEEEcccEEEEEEEEEccccccccccccc //