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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ22170.1
DDBJ      :             hypothetical transport protein
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  299/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.39.1
:299 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  44->142 1s7bA  f.39.1.1 * 2e-04 14.4 %
:RPS:SCOP  197->294 1s7bA  f.39.1.1 * 5e-04 7.1 %
:HMM:SCOP  42->144 1s7bA_ f.39.1.1 * 4.8e-07 20.2 %
:HMM:SCOP  197->295 1s7bA_ f.39.1.1 * 2e-09 17.2 %
:RPS:PFM   167->291 PF00892 * EamA 9e-05 25.2 %
:HMM:PFM   17->143 PF00892 * EamA 5.5e-20 29.0 124/126  
:HMM:PFM   167->293 PF00892 * EamA 7.7e-20 20.8 125/126  
:BLT:SWISS 9->269 YYAM_BACSU 2e-23 22.3 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22170.1 GT:GENE AAZ22170.1 GT:PRODUCT hypothetical transport protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1299633..1300532) GB:FROM 1299633 GB:TO 1300532 GB:DIRECTION - GB:PRODUCT hypothetical transport protein GB:PROTEIN_ID AAZ22170.1 GB:DB_XREF GI:71063167 LENGTH 299 SQ:AASEQ MINKNNVAYIFLFLAALFWSGNFLVGKFASQYQVPPFSLNFYRWLFAWLILAPFTIQELFNKRSYILENYKYYTILGITSVTIFNSIVYYSLNFTQVISGVLMISTIPVMIIFISSILKIEKTNTFQIMGVTCSFIGVVLIITKANLGILMNLDFNKGDITMVFGMLSWATYSALLKKKKHELSQLGLLEVVISFGFIFLIPIYFIEYQMGFRIVLNQNFYMILFYVVLFPGLASFIFWIKGVALIGANRAGVFLHMMPILSAIMAMIIFNEKFMFYHMLGAIFILTGILLSNRKIKNA GT:EXON 1|1-299:0| BL:SWS:NREP 1 BL:SWS:REP 9->269|YYAM_BACSU|2e-23|22.3|260/305| TM:NTM 9 TM:REGION 4->26| TM:REGION 32->54| TM:REGION 70->92| TM:REGION 97->119| TM:REGION 135->156| TM:REGION 184->206| TM:REGION 220->242| TM:REGION 247->269| TM:REGION 272->293| RP:PFM:NREP 1 RP:PFM:REP 167->291|PF00892|9e-05|25.2|123/125|EamA| HM:PFM:NREP 2 HM:PFM:REP 17->143|PF00892|5.5e-20|29.0|124/126|EamA| HM:PFM:REP 167->293|PF00892|7.7e-20|20.8|125/126|EamA| GO:PFM:NREP 1 GO:PFM GO:0016020|"GO:membrane"|PF00892|IPR000620| RP:SCP:NREP 2 RP:SCP:REP 44->142|1s7bA|2e-04|14.4|97/106|f.39.1.1| RP:SCP:REP 197->294|1s7bA|5e-04|7.1|98/106|f.39.1.1| HM:SCP:REP 42->144|1s7bA_|4.8e-07|20.2|99/106|f.39.1.1|1/2|Multidrug resistance efflux transporter EmrE| HM:SCP:REP 197->295|1s7bA_|2e-09|17.2|99/106|f.39.1.1|2/2|Multidrug resistance efflux transporter EmrE| OP:NHOMO 541 OP:NHOMOORG 319 OP:PATTERN 11----11----------1---11--------------21221---------1-1111111------- -1---------------------------------------------------11---------------------------1-1---1111--------------------------------------------1---------1-----------------------------------------111-1-556565884677578-133157642-141-1------62----------------------------------------------111----------------------------------------2-4--1222222211111551---11------1---13--1222111-111------1----1--222--121221--------------11-11112--2331-112211111--------1--1----------------1-----------------------------2-11-11111-111-11-1111--1-1111--3--1111-1111--111211211122-1-123----------111-23-5212214332-1-11----111-1-1-24---1----------------------11--1--1-11-3111---2112-1--2------1-1--------1---1------------------------------11112321----------------1---------111111111111---------------1-2----12-1------23333341-111-11111-11111111111211211111-1221-11112211211---------------122--11------------------------------------22-11121-1--1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-4, 297-299| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccc //