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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : aarF
DDBJ      :aarF         ubiquinone biosynthesis protein
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  597/915 : Eukaryota  144/199 : Viruses  1/175   --->[See Alignment]
d.144.1
:455 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   178->254 2fumD PDBj 6e-04 31.5 %
:RPS:PDB   1->355 3dnuA PDBj 5e-30 9.0 %
:RPS:SCOP  60->345 1zylA1  d.144.1.6 * 5e-18 9.3 %
:HMM:SCOP  1->384 1e8yA4 d.144.1.4 * 6.6e-30 22.9 %
:RPS:PFM   63->115 PF03109 * ABC1 2e-08 44.0 %
:RPS:PFM   171->237 PF06176 * WaaY 5e-04 28.3 %
:HMM:PFM   62->169 PF03109 * ABC1 8.9e-26 37.5 104/119  
:HMM:PFM   158->247 PF01163 * RIO1 1e-07 22.4 85/187  
:BLT:SWISS 1->430 UBIB_MARAV 7e-76 35.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21227.1 GT:GENE aarF GT:PRODUCT ubiquinone biosynthesis protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(394951..396318) GB:FROM 394951 GB:TO 396318 GB:DIRECTION - GB:GENE aarF GB:PRODUCT ubiquinone biosynthesis protein GB:NOTE AarF GB:PROTEIN_ID AAZ21227.1 GB:DB_XREF GI:71062224 GB:GENE:GENE aarF LENGTH 455 SQ:AASEQ MGTTFIKLGQFLVTRPDIIGDDLAKQLEGLQDRLPAFTLTEAKAIIKKDLGDDTFNSIIDLSEPVAAASIAQVHKAKINDNGTIKDVAIKILRPNIKKVFNEEIDALMLFAFMVESFIKKTKRLKLVEVVFLLKEITNLEMDLRFEAAAANEYAENTKNDAGFRVPAIYWNFTSENVMTLDWVEGVSIRETEDLQKRNIDTKRIASDVIQHFLRHAVRDGFFHADMHQGNIFIDDNGQIVPIDFGIMGRLDNLSKRFLAEILFGFIQRDYKKVAEVHLVAGLVPKDVPVNDLAQALRSIGEPIFGQSVKDISGGKLLKQLFEVTEKFNMQTQPQLLMLQKTMVVVEGVARKLNPNTNIWETSKPVLESWLRETKDPINTLNESLKSTTEVIKRLPDFPEIMDKANQALSFLASGQIPQNSNSFTALNEKRSEMTAFRNQSIVGLLLLVIFGLVVF GT:EXON 1|1-455:0| BL:SWS:NREP 1 BL:SWS:REP 1->430|UBIB_MARAV|7e-76|35.1|425/547| TM:NTM 1 TM:REGION 436->455| SEG 124->135|lklvevvfllke| SEG 146->156|eaaaaneyaen| SEG 441->454|ivgllllvifglvv| BL:PDB:NREP 1 BL:PDB:REP 178->254|2fumD|6e-04|31.5|73/258| RP:PDB:NREP 1 RP:PDB:REP 1->355|3dnuA|5e-30|9.0|322/401| RP:PFM:NREP 2 RP:PFM:REP 63->115|PF03109|2e-08|44.0|50/119|ABC1| RP:PFM:REP 171->237|PF06176|5e-04|28.3|60/229|WaaY| HM:PFM:NREP 2 HM:PFM:REP 62->169|PF03109|8.9e-26|37.5|104/119|ABC1| HM:PFM:REP 158->247|PF01163|1e-07|22.4|85/187|RIO1| GO:PFM:NREP 1 GO:PFM GO:0009244|"GO:lipopolysaccharide core region biosynthetic process"|PF06176|IPR009330| RP:SCP:NREP 1 RP:SCP:REP 60->345|1zylA1|5e-18|9.3|281/325|d.144.1.6| HM:SCP:REP 1->384|1e8yA4|6.6e-30|22.9|349/0|d.144.1.4|1/1|Protein kinase-like (PK-like)| OP:NHOMO 1477 OP:NHOMOORG 775 OP:PATTERN ------1111111111--------31121112111--------1-11--2221--------111--11 --211---------42222-21222222222111122311----11---1--11-111--1-1------1-1111111-1211--111-----------1--12--111---------------------------22222---114665555443333343455444445333333333333-------11-------12----111-11-------1211111-------1---------------------------1---1111------------------------------------------------111----11-1-1111111111-122-111--11---11222---311222121--1112211211111111111111111111111111111-222222322111111111111111131111111111211-------------11111111111111111111111111111111131311111111111111111111221111111221111112211113123321111122122211111112221111-2211---2-----111211111111113-21-------------------11-1111112122111121111112111111111111--11111------11111111111111111-11111111111111111111111111111111111111111112111111111111111111111111111111111123211111---1----1111333333322211111111111-1111111111111111111111111111111333333333311111111222222-----------------------------------------------1- 1111222-93--223-12--1------------1111212112-----11---------22211-111131211-11111133112-2----11--11111-1-1--3A41232331111122133-31231-314-12221222-2-1121-311111--22222-21291123789E*GEEBBM9DI-FGCD3222G ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 375 STR:RPRED 82.4 SQ:SECSTR TccccHHHHHHHHHHHTcccccHHHHHHHHTTcccTTTTTTTHHHHHHEEEEETTccccEccEEccHHHHHHHHHTTTccTcEEcccccccccccEEEEEETTEEEEEcTTccccEEEEEcEEEccccTTHHHHHHHHHHHHHHTTcccccEEEEEETTEEEEEEEcccEEEcTTccTTccGGGccGGGTcccHHHHHHHTcTTHHHHHHHHHHHHHHHHTTcccccGGGcEEcGGGcEEEccccccGGGTTTccccGGGcEEEEEEETTEEEEEGGcGGGccHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHGGGccTTccHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHH################################################################################ DISOP:02AL 411-412, 416-435| PSIPRED ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccEEEEEEccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccEEEEcccHHHEEEcccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //