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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : accD
DDBJ      :accD         Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  732/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
c.14.1
:309 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->273 2f9yB PDBj 2e-54 43.2 %
:RPS:PDB   32->63 3cw2M PDBj 3e-04 31.2 %
:RPS:PDB   43->271 3buzA PDBj 3e-33 6.9 %
:RPS:SCOP  32->274 2f9yB1  c.14.1.4 * 2e-54 42.6 %
:HMM:SCOP  28->292 2a7sA1 c.14.1.4 * 4.9e-60 30.4 %
:RPS:PFM   60->268 PF01039 * Carboxyl_trans 6e-25 36.3 %
:HMM:PFM   122->292 PF01039 * Carboxyl_trans 3e-14 27.2 169/493  
:BLT:SWISS 32->274 ACCD_METCA 5e-68 50.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21308.1 GT:GENE accD GT:PRODUCT Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(475411..476340) GB:FROM 475411 GB:TO 476340 GB:DIRECTION - GB:GENE accD GB:PRODUCT Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta GB:PROTEIN_ID AAZ21308.1 GB:DB_XREF GI:71062305 GB:GENE:GENE accD LENGTH 309 SQ:AASEQ MNWIKKTLRFGEKIKTIIKARATKTEIANSDWTSCCKGPILKKDLEENLWVCPSCNKHHRISPRQRFDIIFGKNNYEVLKTPIPQDDPLNWNDAKPYKDRLKAARKKTGMDCGMMVVNTNILNLKITAIASDFDFVGGSIGAAEGEAFLYGIQHAIENEQPFVVFTSGGGMRMMESLISLSQMTRTTLAINELKKNNLPYIVVLTDPTAGGITASYAMLGDLHLAEPGALIAFAGARVIQGTVREELPEGFQRSEYVEKTGFVDLIVERKDLREKIGSLLSILLKKNSAINSSENETSEDSRALTKAAS GT:EXON 1|1-309:0| BL:SWS:NREP 1 BL:SWS:REP 32->274|ACCD_METCA|5e-68|50.6|243/324| SEG 12->28|ekiktiikaratkteia| SEG 275->290|kigsllsillkknsai| BL:PDB:NREP 1 BL:PDB:REP 32->273|2f9yB|2e-54|43.2|236/257| RP:PDB:NREP 2 RP:PDB:REP 32->63|3cw2M|3e-04|31.2|32/138| RP:PDB:REP 43->271|3buzA|3e-33|6.9|217/413| RP:PFM:NREP 1 RP:PFM:REP 60->268|PF01039|6e-25|36.3|193/454|Carboxyl_trans| HM:PFM:NREP 1 HM:PFM:REP 122->292|PF01039|3e-14|27.2|169/493|Carboxyl_trans| GO:PFM:NREP 1 GO:PFM GO:0016874|"GO:ligase activity"|PF01039|IPR000022| RP:SCP:NREP 1 RP:SCP:REP 32->274|2f9yB1|2e-54|42.6|237/257|c.14.1.4| HM:SCP:REP 28->292|2a7sA1|4.9e-60|30.4|250/0|c.14.1.4|1/1|ClpP/crotonase| OP:NHOMO 772 OP:NHOMOORG 742 OP:PATTERN -------------------------------------------------------------------- 111-1-11111-1---111-11--1211111111111322-111---1-----11-----111--12------------111211111--------1--111111111111111111111111112122221221211122---1211111111111111111111111111111111111111111111-111111111111111111111111111111211111111111111111111111111111111-111111-1-22111111111111111111111111111111111111111111111111111111111--11111111111111111111111----2111111111111------11111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111-----------------------------111111111111111111111111111111-1111111111111111111111111111111111111111111111----11111121111111111111111111--1111111111111111111111111111111111111--------------------1-11111------11111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112212211111111111111111---------------1-1-----------------------------------11- -----------1--------------------------------------------------------------------------------------------------------------------------------------------------2--------------1-111------1---2--1------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 246 STR:RPRED 79.6 SQ:SECSTR ############################cccHHHHHHHHHHHcccTTcHHHHHHHHHHHHccHHHHHHHHHHHHTHHHHHHHHHcGGGEEccHHHHHTcHHHTGGHHHHHHHHHHHHccccccEEEEEEcGGGGTcccccccTTcccccHHHHHHHHHHccEEEEEccccEEEEEEEEEEccccccTTcccEEEEEEEcTTcccEEEEETTEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEcccccTTcHHHHHHHHHHHHTTHHHHHH################################### DISOP:02AL 12-28, 288-302, 304-309| PSIPRED ccHHHHHcccccccccccccccccccccccHHHHcccccccHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccccEEEEEEEEccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHcEEEEEEcccEEEEEcHHHHHHHHcEEccccccHHHHHHHccEEEEEEcHHHHHHHHHHHHHHHcccccccccccccccccccccccccc //