[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : aceE
DDBJ      :aceE         pyruvate dehydrogenase (lipoamide) e1 component
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  434/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
b.84.1c.36.1c.48.1
:1012 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->70 1iyuA PDBj 2e-08 40.3 %
:BLT:PDB   182->1009 2g25A PDBj 0.0 57.5 %
:RPS:PDB   26->70 2d5dA PDBj 2e-08 28.9 %
:RPS:PDB   198->999 1ay0A PDBj 9e-66 19.1 %
:RPS:SCOP  7->70 1gjxA  b.84.1.1 * 2e-10 37.5 %
:RPS:SCOP  180->588 1l8aA1  c.36.1.10 * 9e-68 61.6 %
:RPS:SCOP  593->822 1l8aA2  c.36.1.6 * e-107 61.8 %
:RPS:SCOP  830->1009 1l8aA3  c.48.1.1 * 5e-30 45.8 %
:HMM:SCOP  1->81 1gjxA_ b.84.1.1 * 1.4e-19 34.6 %
:HMM:SCOP  179->593 1l8aA1 c.36.1.10 * 5.3e-135 40.5 %
:HMM:SCOP  593->822 1l8aA2 c.36.1.6 * 1.2e-103 58.5 %
:HMM:SCOP  825->1012 1l8aA3 c.48.1.1 * 6.6e-56 38.9 %
:RPS:PFM   228->426 PF00456 * Transketolase_N 2e-24 43.0 %
:RPS:PFM   554->606 PF11274 * DUF3074 2e-04 28.3 %
:HMM:PFM   5->75 PF00364 * Biotin_lipoyl 1.2e-21 36.6 71/74  
:HMM:PFM   203->417 PF00456 * Transketolase_N 1.8e-14 28.2 206/333  
:HMM:PFM   484->524 PF00456 * Transketolase_N 2.1e-07 29.3 41/333  
:HMM:PFM   44->112 PF00529 * HlyD 7.5e-08 25.0 60/306  
:HMM:PFM   848->886 PF02780 * Transketolase_C 0.00051 23.7 38/124  
:BLT:SWISS 3->70 ODP2_PSEAE 2e-11 44.1 %
:BLT:SWISS 131->1009 ODP1_PSEAE 0.0 60.6 %
:PROS 26->55|PS00189|LIPOYL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21251.1 GT:GENE aceE GT:PRODUCT pyruvate dehydrogenase (lipoamide) e1 component GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 416904..419942 GB:FROM 416904 GB:TO 419942 GB:DIRECTION + GB:GENE aceE GB:PRODUCT pyruvate dehydrogenase (lipoamide) e1 component GB:PROTEIN_ID AAZ21251.1 GB:DB_XREF GI:71062248 GB:GENE:GENE aceE LENGTH 1012 SQ:AASEQ MSEKLLVPDIGEFEKVEVIELLVKVGDQINLNDPVVTIESDKSSVEIPSTVSGKIESVNIKVGDKVSKGDILLSIESSKESPSEKPIPKDTESIIKQAESVLKNEKKEEASQQSPAPEKKQTIIQVTNENDIDPLETQDWLESLSAVVEKDGNQRAHFLIKELINKAYQEGANIPYTQHTPYINTIPPEAEVKSNGDQNIERRIRSLIRWNAAAMVVRANKKFPELGGHIGTFASAATLYDVGMNHFWRAKNNKFGGDLVYFQGHSAPGIYARAFLEGRLNEKQLDSFRQEVKPGGLSSYPHPWLMPKFWQFPTVSMGLGPMLAIYQARYMKYLINRGLIKDEGRKVWAFLGDGEMDEPESLGAIGLASREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGSFRGAGWNVIKVIWGSYWDSLIANDKTGHLVKAMNETVDGEYQAMKARDGAYVREKFFGKYPETQELVSSLSDKDIWRLNRGGHDPHKVYAAYDQASKNQGSPTVIIAKTIKGYGMGKTGESVNTTHQTKKLDVDDLLYYRDRFDVPLTDDQVKNVEYFKPDEKSPEIKYIKERRTNLGGSLPERTTYAKPIKAPAKDIFDFMKVSTGEKEMSTTMALVRMFTNLLRDKNVSPRLVPIIPDEARTFGMEGFFQKIGIYAHEGQKYEPEDSAQLSSYREDKSGQVLEEGINEAGAMSSWIAAATAYTNHDIEMIPIYIFYSMFGFQRIGDLAWAAGDSQARGFLIGATAGRTTLAGEGLQHQDGHSHLIASTIPNCVTYDPTFHYELAVIFREGLRRMHEKNENVFYYITTMNENYSHPGMPKDKNCEEGILKGMYKIKEFNRYGKTKIQLLGSGTILREMMSAAEILQNEYQIDSEIWSVTSFNELRKDGMEVERYNLLNPDKEQKVSFVEQCLGKTEGPIMAASDYMRMNSDQIRPYTNKSFYSLGTDGYGRSDTRKNLRKFFEVDKEHIVAYGLSVLAKEQLIASKYAKEAIKKYNIDGSKPMPTKL GT:EXON 1|1-1012:0| BL:SWS:NREP 2 BL:SWS:REP 3->70|ODP2_PSEAE|2e-11|44.1|68/547| BL:SWS:REP 131->1009|ODP1_PSEAE|0.0|60.6|876/882| PROS 26->55|PS00189|LIPOYL|PDOC00168| SEG 12->25|efekveviellvkv| SEG 71->89|illsiesskespsekpipk| SEG 536->549|dvddllyyrdrfdv| BL:PDB:NREP 2 BL:PDB:REP 2->70|1iyuA|2e-08|40.3|67/79| BL:PDB:REP 182->1009|2g25A|0.0|57.5|822/831| RP:PDB:NREP 2 RP:PDB:REP 26->70|2d5dA|2e-08|28.9|45/70| RP:PDB:REP 198->999|1ay0A|9e-66|19.1|665/678| RP:PFM:NREP 2 RP:PFM:REP 228->426|PF00456|2e-24|43.0|193/275|Transketolase_N| RP:PFM:REP 554->606|PF11274|2e-04|28.3|53/184|DUF3074| HM:PFM:NREP 5 HM:PFM:REP 5->75|PF00364|1.2e-21|36.6|71/74|Biotin_lipoyl| HM:PFM:REP 203->417|PF00456|1.8e-14|28.2|206/333|Transketolase_N| HM:PFM:REP 484->524|PF00456|2.1e-07|29.3|41/333|Transketolase_N| HM:PFM:REP 44->112|PF00529|7.5e-08|25.0|60/306|HlyD| HM:PFM:REP 848->886|PF02780|0.00051|23.7|38/124|Transketolase_C| RP:SCP:NREP 4 RP:SCP:REP 7->70|1gjxA|2e-10|37.5|64/81|b.84.1.1| RP:SCP:REP 180->588|1l8aA1|9e-68|61.6|396/402|c.36.1.10| RP:SCP:REP 593->822|1l8aA2|e-107|61.8|212/213|c.36.1.6| RP:SCP:REP 830->1009|1l8aA3|5e-30|45.8|177/186|c.48.1.1| HM:SCP:REP 1->81|1gjxA_|1.4e-19|34.6|81/81|b.84.1.1|1/1|Single hybrid motif| HM:SCP:REP 179->593|1l8aA1|5.3e-135|40.5|415/415|c.36.1.10|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 593->822|1l8aA2|1.2e-103|58.5|229/230|c.36.1.6|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 825->1012|1l8aA3|6.6e-56|38.9|185/186|c.48.1.1|1/1|TK C-terminal domain-like| OP:NHOMO 559 OP:NHOMOORG 442 OP:PATTERN -----------------1-------------------1--1--------------------------- 1211211111111111111-11112211111211111245-11211211111322111112231121232--------1-------1---------------11-1---1--------------------------11111------------------------------------------11111--------------------------------------------------------------------------------------------------------------------------------------------111-1---1--111------------------------11-1-1--111111-----11311--1--111----------1---3--3-1-1--------------11-1-11-1--1-11--------2-----1------------------------------2--1--2222222241232222112322221232312321311112122222241122-1212111111112111111-----------------------1111----1-------------------1-11---1111121121111111111111111111111-2121111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111211111222212211111111111111111111111111111221223141111113121111121112111111111111112211111111111112--------------------------------------------------------- ------------------------------------------------------------------------------------------------------------1------------------------------------------------------1---------1--------------1-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1001 STR:RPRED 98.9 SQ:SECSTR EEEEEEcccTTTcTTcccEEEEEEETcEEcTTcEEEEEEETTEEEEEEccccEEEEEEcccTTcEEcTTccEEE#######HcTTTTTccEEEEEEccHHHHHHHHTcccccccccccccEEEEEcc###cccccTTccccGGGcccccTTccccccccccccTTccGGTTGGGcEEccccTTcccccGGGccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcTccccHHHHHHHHHHHHHccccTTcTTcTTccEEEEccGGGHHHHHHHHHHTTccccHHHHTTTTcTHHHTccccccccTTcTTcccccccTTHHHHHHHHHHHHHHHHHHHHccTTccccEEEEEcHHHHHcHHHHHHHHHHHHTTcTTEEEccHHHHHTTTcHHHHHHHHHHHHHHHHHHTTTTGGGEEEEccEccccEEEcccccccccEEETTEEGGGTccccHHHHHHHHTcEETTEEEEEEEETTHHHEEEccTTTcHHHHHHHHHHHTTcTTccEEEEEEccTTTTcTTTTcGGGTcccHHHHHHHHHTTccTTccccccHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHTTTcccTTGGGGcccccTTcccEEHHHHHHHHHHHHTTTcTTEEEEEcccHHHHTcccTTHHHHHHHHcccEEccGGGTTTTHccEETTccEEEccccHHHHHHHHHHHHHHHHHHcTTcEEEEEEEHHHHGGGHHHHHHHHHHTcccEEEEEEEcccGGGcTTcTTcccccHHHHHTcccccEEEccccHHHHHHHHHHHHHccccEEGcccEEEEccccEEcccTTcHHHTcHHHHTTccEEEEEEEccccccEEEEEcTTHHHHHHHHHHHHHHTTTccEEEEEcccHHHHcHHTccHHHHHHHccTTccEEEEccHHcTcTTccEEcccGGGGGTccEEGGTccEEEEEEccccccccccHHHHHHHHTccHHHHHHHHHHHHHHHTHHTTcccccTTcccTTccTTHHHHH# DISOP:02AL 78-158, 166-198, 610-615, 1011-1012| PSIPRED ccEEEEcccccccccEEEEEEEEccccEEccccEEEEEEEccEEEEEEcccccEEEEEEEccccEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEEcccEEEcccccccccccHHHHHHHHHcccEEEEEEccccHHHHHHcccccHHHHHHcccccccHHEEcccccEEEccccccccccHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccEEEcccccccEEEHHHHHHHHHHHHHHHHccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccHHHHHHHHcccEEEEEcccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccEEEEEcHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccc //