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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : acrA
DDBJ      :acrA         AcrA-like protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  131/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.46.1
:237 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   25->144 3fppB PDBj 1e-05 25.0 %
:RPS:PDB   127->191 2ejmA PDBj 2e-05 10.8 %
:RPS:PDB   191->236 1e0bA PDBj 2e-04 17.4 %
:RPS:SCOP  24->237 1t5eA  f.46.1.1 * 2e-21 19.6 %
:HMM:SCOP  20->238 1vf7A_ f.46.1.1 * 4.3e-21 25.1 %
:RPS:PFM   35->174 PF00529 * HlyD 2e-04 30.0 %
:HMM:PFM   34->90 PF00529 * HlyD 2.3e-08 27.3 55/306  
:HMM:PFM   70->125 PF02321 * OEP 0.00094 25.0 56/188  
:BLT:SWISS 27->231 SRPA_PSEPU 6e-11 24.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21745.1 GT:GENE acrA GT:PRODUCT AcrA-like protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 917722..918435 GB:FROM 917722 GB:TO 918435 GB:DIRECTION + GB:GENE acrA GB:PRODUCT AcrA-like protein GB:NOTE similar to COG0845: Membrane-fusion protein GB:PROTEIN_ID AAZ21745.1 GB:DB_XREF GI:71062742 GB:GENE:GENE acrA LENGTH 237 SQ:AASEQ MKQLLFILFIYLSFLNPVHSEEREARGLVSATEKVSISSEIAARVQSINFLLGDAFKEGDVLISFDCEIYKAQKDVIKAEHESARIQLENDKELLELRSIGKLQYQLTVSNYEKAKAELSIATLNVDRCEIIAPYDGKVMDVYTTIFTSIEQRQPLMDIVGDGLLEAEIVAPSNWLKWLKKGHNVKIIIDETGETLDATVISLGATVDAISQTIELKAQFNEKYDSLIPGMSGIVKF GT:EXON 1|1-237:0| BL:SWS:NREP 1 BL:SWS:REP 27->231|SRPA_PSEPU|6e-11|24.4|205/382| SEG 4->15|llfilfiylsfl| BL:PDB:NREP 1 BL:PDB:REP 25->144|3fppB|1e-05|25.0|120/267| RP:PDB:NREP 2 RP:PDB:REP 127->191|2ejmA|2e-05|10.8|65/99| RP:PDB:REP 191->236|1e0bA|2e-04|17.4|46/61| RP:PFM:NREP 1 RP:PFM:REP 35->174|PF00529|2e-04|30.0|140/259|HlyD| HM:PFM:NREP 2 HM:PFM:REP 34->90|PF00529|2.3e-08|27.3|55/306|HlyD| HM:PFM:REP 70->125|PF02321|0.00094|25.0|56/188|OEP| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 1 RP:SCP:REP 24->237|1t5eA|2e-21|19.6|214/231|f.46.1.1| HM:SCP:REP 20->238|1vf7A_|4.3e-21|25.1|219/237|f.46.1.1|1/1|HlyD-like secretion proteins| OP:NHOMO 186 OP:NHOMOORG 131 OP:PATTERN -------------------------------------------------------------------- -1--------------------------------------------------------------------------------------1133-2-------1----1111---------------------11-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------1-1----1------------------------1---11-11-111--1111------------------------31----------------1-------------1----------------1--------------------1-2---1------1----------1-----------111-----11---1---------1-21--------3-1-111111--------------------11-113212-11112231131333321---11----------13------------------------------------12---------------------------------------------22-21------1-3111111-----111------------1-111112---1-12---1--------114431111123222-1--------------2-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 213 STR:RPRED 89.9 SQ:SECSTR #######################EEEEEEEEEEEEEEcccccEEccEEcccTTccccTTcEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccTTHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccTTEEEccccEEEEEEccccEEEEEccccEEEEEEcccTTEEEcTTcTTcTTTTTEEEEEEEEEcTTccEEEEEEETTccEEEEEHHHHHHH# PSIPRED ccEEEEEEEEEEcccccccccEEEEEEEEEEEEEEEEEEEcccEEEEEEcccccEEEcccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccEEEEEEEEccccEEccccEEEEEEEccEEEEEEEEcHHHHHHcccccEEEEEEcccccEEEEEEEEEEEEEcccccEEEEEEEEEccccccccccEEEEEc //