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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : acrB
DDBJ      :acrB         probable integral membrane protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  48/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.35.1
:794 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  222->362 1iwgA7  f.35.1.1 * 4e-13 10.0 %
:RPS:SCOP  637->788 1iwgA7  f.35.1.1 * 3e-12 13.5 %
:HMM:SCOP  144->394 1iwgA8 f.35.1.1 * 7.9e-27 24.3 %
:HMM:SCOP  565->796 1iwgA8 f.35.1.1 * 6e-33 23.7 %
:RPS:PFM   153->356 PF03176 * MMPL 6e-09 23.8 %
:RPS:PFM   703->788 PF03176 * MMPL 3e-09 32.6 %
:HMM:PFM   144->392 PF03176 * MMPL 8.2e-17 21.7 230/333  
:HMM:PFM   581->788 PF03176 * MMPL 8.6e-17 20.2 208/333  
:BLT:SWISS 106->198 Y1893_SULSO 6e-04 36.4 %
:BLT:SWISS 234->366 DISP1_MOUSE 3e-04 28.8 %
:BLT:SWISS 704->783 YDGH_BACSU 3e-04 34.6 %
:TM
:REPEAT 2|161->363|558->764
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21520.1 GT:GENE acrB GT:PRODUCT probable integral membrane protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(684906..687290) GB:FROM 684906 GB:TO 687290 GB:DIRECTION - GB:GENE acrB GB:PRODUCT probable integral membrane protein GB:PROTEIN_ID AAZ21520.1 GB:DB_XREF GI:71062517 GB:GENE:GENE acrB LENGTH 794 SQ:AASEQ MLSLFYQNIVLKNPKSIFILLLITLLSFGYFSKDFRLDASSDTLLIEGDPDLEYLKEVTERYGSKEFLILTYSPNEGMVTESSINNLLSLKYKIQSLDWVHSVITLLDIPLLNNSEAPLQERLESFKTLKDEGVDTERGFNEILNSPVFRNFVISEDGKTSGIIVYIKKDELKDIENKSAQEIEEYKDTLKKKNHENITQIREVIKTYGDVGKIYLGGIPMITDDMMSFIKSDIIVFGLGVLLFIIATLWFIFRKLIWIIVPISSCFFSVLIMTGLLGLLGWKVTVISSNFIALMLILTMAMNIHMSTRFLQLREDFPNLDNLKIIIMTTSKMFWPIIYTVLTTICAFLSLVFSGIKPIIDFGWMMTLGLITSFIITFTLLPTLLSFMSSNKVKIKEDADSKITSFFGKISINNKSIIFLVTGLVVVLSVVGISKLEVENSFINYFNKNTEIYKGMKLIDEKLGGTTPLEVILKFPENIIVETTEDDEFESWDDEGSKDDEKYWFTKDKIEKIQNVHNYLDNLPAVGKVLSFSSIIEVATQLNNNKPLGTLEMGVLYSKIPETIKKDIIDPYISIKDNEARISLRIIDSQDGLRRNDLINQINYDLENELKLSKEEFKLAGVLILFNNLLQSLFKSQILTLGLVMVGIFAMFMILFRNFKLSLIGVVPNFIAAFFILGIIGLLGIPLDMMTITIAAITIGIAVDNSIHYIYRFKEEFLKIKDYNKTLKVCHSTVGVAILNTSITIVFGFSILVFSKFIPTIYFGVFTGLAMLLAMISVLTLLPSLILISKPFGK GT:EXON 1|1-794:0| BL:SWS:NREP 3 BL:SWS:REP 106->198|Y1893_SULSO|6e-04|36.4|88/530| BL:SWS:REP 234->366|DISP1_MOUSE|3e-04|28.8|125/1521| BL:SWS:REP 704->783|YDGH_BACSU|3e-04|34.6|78/885| TM:NTM 13 TM:REGION 6->28| TM:REGION 202->224| TM:REGION 228->250| TM:REGION 256->278| TM:REGION 283->305| TM:REGION 330->352| TM:REGION 369->391| TM:REGION 412->434| TM:REGION 635->657| TM:REGION 662->684| TM:REGION 688->710| TM:REGION 730->752| TM:REGION 765->787| NREPEAT 1 REPEAT 2|161->363|558->764| SEG 16->28|sifilllitllsf| SEG 367->390|tlglitsfiitftllptllsfmss| SEG 420->432|lvtglvvvlsvvg| SEG 670->685|fiaaffilgiigllgi| SEG 691->702|titiaaitigia| RP:PFM:NREP 2 RP:PFM:REP 153->356|PF03176|6e-09|23.8|185/284|MMPL| RP:PFM:REP 703->788|PF03176|3e-09|32.6|86/284|MMPL| HM:PFM:NREP 2 HM:PFM:REP 144->392|PF03176|8.2e-17|21.7|230/333|MMPL| HM:PFM:REP 581->788|PF03176|8.6e-17|20.2|208/333|MMPL| GO:PFM:NREP 2 GO:PFM GO:0016020|"GO:membrane"|PF03176|IPR004869| GO:PFM GO:0016020|"GO:membrane"|PF03176|IPR004869| RP:SCP:NREP 2 RP:SCP:REP 222->362|1iwgA7|4e-13|10.0|140/199|f.35.1.1| RP:SCP:REP 637->788|1iwgA7|3e-12|13.5|152/199|f.35.1.1| HM:SCP:REP 144->394|1iwgA8|7.9e-27|24.3|218/223|f.35.1.1|1/2|Multidrug efflux transporter AcrB transmembrane domain| HM:SCP:REP 565->796|1iwgA8|6e-33|23.7|219/223|f.35.1.1|2/2|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 60 OP:NHOMOORG 49 OP:PATTERN ----------------------------------------1--------------------------- -----------------------------------------------------------------------------------------------------1-1------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------16-3--1---1---------------------11111111111---------1---1------13111-------------------------11---------------------------------------------------------------------------------------------2----------11-----------------11111------1-------------------------------------11----------------111--------11-----2-------------------------------1-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 313-325, 390-402| PSIPRED cHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEccHHHHcccccHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEEccEEccccccccHHccccccccccccHHHHHHHHHHHcccHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEcccHHHHccccHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //