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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : acuC
DDBJ      :acuC         histone deacetylase family protein
Swiss-Prot:             

Homologs  Archaea  50/68 : Bacteria  432/915 : Eukaryota  198/199 : Viruses  0/175   --->[See Alignment]
c.42.1
:309 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   75->306 2vqoB PDBj 2e-43 44.3 %
:RPS:PDB   2->308 3c0zA PDBj 7e-78 35.3 %
:RPS:SCOP  2->306 3c0yA1  c.42.1.2 * 5e-77 35.9 %
:HMM:SCOP  1->307 1t64A_ c.42.1.2 * 1.8e-98 45.1 %
:RPS:PFM   20->305 PF00850 * Hist_deacetyl 5e-68 46.6 %
:HMM:PFM   11->305 PF00850 * Hist_deacetyl 4.4e-96 45.4 291/306  
:BLT:SWISS 5->306 Y245_SYNY3 2e-57 40.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21282.1 GT:GENE acuC GT:PRODUCT histone deacetylase family protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(454433..455362) GB:FROM 454433 GB:TO 455362 GB:DIRECTION - GB:GENE acuC GB:PRODUCT histone deacetylase family protein GB:PROTEIN_ID AAZ21282.1 GB:DB_XREF GI:71062279 GB:GENE:GENE acuC LENGTH 309 SQ:AASEQ MKTGLITSDTYQNHNTGDGHPEKIDRVTVVIDNFKKLDNKNLIWKKPSKFNRSLLEITHNSDYINFVEKSFPEKGLSFLDGDTIVSPGSKDATLDAVGSIITAIDGVQNKDFKNAFCAVRPPGHHAEKNKAMGFCIYNNVAVGANYLINKYKLKKIAIIDFDVHHGNGTQDIFYDNEKVLYISTHQYPYYPGSGTNDEKGKHNNILNIPLPAGTTSEEYLNAYEFVLNKIKEFKPEFILLSAGFDAHKDDPLAQLQLESKDFYNITKRTLELSKQYCDGKVVSILEGGYDLQALQESTEMHVKALLEFN GT:EXON 1|1-309:0| BL:SWS:NREP 1 BL:SWS:REP 5->306|Y245_SYNY3|2e-57|40.7|295/304| BL:PDB:NREP 1 BL:PDB:REP 75->306|2vqoB|2e-43|44.3|228/358| RP:PDB:NREP 1 RP:PDB:REP 2->308|3c0zA|7e-78|35.3|303/383| RP:PFM:NREP 1 RP:PFM:REP 20->305|PF00850|5e-68|46.6|281/304|Hist_deacetyl| HM:PFM:NREP 1 HM:PFM:REP 11->305|PF00850|4.4e-96|45.4|291/306|Hist_deacetyl| RP:SCP:NREP 1 RP:SCP:REP 2->306|3c0yA1|5e-77|35.9|301/386|c.42.1.2| HM:SCP:REP 1->307|1t64A_|1.8e-98|45.1|297/364|c.42.1.2|1/1|Arginase/deacetylase| OP:NHOMO 2324 OP:NHOMOORG 680 OP:PATTERN 22121122333333331111111311111121--1-1-------1-225-1111111111----21-- -231-1---------11--------1----------2111111111111---111111--111-2111111-----------322111---------------1111-21--------------------------33333111121132221222211111121122222------------2112211--111111111111111111111111111111111------111111111111111111--11----------------------------------------------------------------------1------------------------------111111321121--11---2113221-----122221111122111111111112-23312212151-211122222211211-12314444326--------1-----12-----------------------------11-3--34333333434155653312555544442323312222232221351412221111221111111-11122-2342121111111112111112-11-13133--------------------1--111111-23-2222111111-1-111-1111--1---1312-------------------------------------------111--11-----------------1----------------------------------11312-----------------------111133332534224221111---------2111-11111111111111111111------1-222222------------------------------------11--1-1---11- 34334421B4414473444444444344444444444434344444444444443344444455555536555365555556666633-7754567666576577726H5CCHDG9988659B9SI9O9n*I3IDG6686E7BC84AA64F43H8DAB9768487728587AA8649B8i987BBBDEC4BAA999B86 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 307 STR:RPRED 99.4 SQ:SECSTR #cEEEEccGGGGGcccTTcccccTHHHHHHHHHHHHTTcGGcEEEccccccHHHHTTTccHHHHHHHHccTTcccccccccccccTTTHHHHHHHHHHHHHHHHHHHHTTcccEEEEccccccTTccTTcccTTccccHHHHHHHHHHHHcTTccEEEEEccccccHHHHHHHTTcTTEEEEEEEEcccTTccccTTcccEEEEEEcccccccccHHHHHHHHHHTHHHHHHHcccEEEEEEccTTcTTcGGccccccHHHHHHHHHHHTTcGGGGcGGcEEEEEcccccHHHHHHHHHHHHHHHHTc# PSIPRED cEEEEEEcHHHHcccccccccccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHccHHHHHHHHHHccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccEEHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccc //