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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : amsK
DDBJ      :amsK         glycosyl transferase
Swiss-Prot:             

Homologs  Archaea  41/68 : Bacteria  296/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
c.87.1
:341 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   102->339 2jjmA PDBj 2e-11 26.1 %
:RPS:PDB   113->341 3c48A PDBj 4e-33 20.1 %
:RPS:SCOP  4->340 2iv7A1  c.87.1.8 * 5e-32 14.8 %
:HMM:SCOP  4->341 2bisA1 c.87.1.8 * 2.5e-52 26.5 %
:RPS:PFM   158->320 PF00534 * Glycos_transf_1 5e-15 31.2 %
:HMM:PFM   154->322 PF00534 * Glycos_transf_1 1.7e-33 30.5 164/172  
:BLT:SWISS 64->289 AMSK_ERWAM 3e-15 27.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22007.1 GT:GENE amsK GT:PRODUCT glycosyl transferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1149702..1150727 GB:FROM 1149702 GB:TO 1150727 GB:DIRECTION + GB:GENE amsK GB:PRODUCT glycosyl transferase GB:PROTEIN_ID AAZ22007.1 GB:DB_XREF GI:71063004 GB:GENE:GENE amsK LENGTH 341 SQ:AASEQ MWGLANELSKHYMIKVFADYHENHKLFDEQVSFSIERVGGIKLLRKYRKAQLINEFIKENKIDGIIADHWKSLEHLKTNKKKICLIHGKEINHEKGTSLNKRVLEVLDSVETIVANSEYTKNLAISLGVQQDKIVVINPGVDPVEELDKKTLDKVENLLKHKSPKLITVSRFDKRKNHEKVIMALRNLKQIYPSIIYICVGYGDEEENIKKLVAELGLQPQVMFFKDISNELKNALVAKSNIFVMPSIVHKKSVEGFGIAYVEAAQYGLPSLGGKDGGAADAIEHEKTGLICNGNELDEVYSSINLMLENNKFQEYGKAAKENSAKFKWSTIIEEYKKILN GT:EXON 1|1-341:0| BL:SWS:NREP 1 BL:SWS:REP 64->289|AMSK_ERWAM|3e-15|27.5|218/407| BL:PDB:NREP 1 BL:PDB:REP 102->339|2jjmA|2e-11|26.1|230/359| RP:PDB:NREP 1 RP:PDB:REP 113->341|3c48A|4e-33|20.1|224/399| RP:PFM:NREP 1 RP:PFM:REP 158->320|PF00534|5e-15|31.2|157/165|Glycos_transf_1| HM:PFM:NREP 1 HM:PFM:REP 154->322|PF00534|1.7e-33|30.5|164/172|Glycos_transf_1| GO:PFM:NREP 1 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00534|IPR001296| RP:SCP:NREP 1 RP:SCP:REP 4->340|2iv7A1|5e-32|14.8|330/370|c.87.1.8| HM:SCP:REP 4->341|2bisA1|2.5e-52|26.5|332/0|c.87.1.8|1/1|UDP-Glycosyltransferase/glycogen phosphorylase| OP:NHOMO 558 OP:NHOMOORG 350 OP:PATTERN 22----11------11121--2111--1121--22123-1212-1-32-1436-2412332--1---- ----13222221-322222-222222222222222222221-112--------1------221-11-2122------------2--11114-12------22231-3222-----------------21-121-2--1144--12-5223232-----------21-4961--1-----1--------23---1112123112112321-211-121433212--------13---1-12-11---11132------11----112------1----------------11111111111--------------------------211111121-1-112223-2111--1-21111324-22-211-21--121---------21-----1---------------------------1-----1211111---1--------------------1-----------------111111211111111----2--1-------2----21------2---------1----------1------------1-------1----11--11-11-22--111---2-1----1-1----1-2-21-------1--1-----------------5111-2---111----------1-------2111-------1----1--------------------------------1-----------------------1-----1-----------------------1-1112---------1111--------11---1-1-----------------1------------1------1-------------------1111------------1-----------1---------------1311--21---2- ---------------------------------------------------111------------------------------------------------------------------------------------------------------------111--------1-1------------2-12--1-1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 341 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHHHTcEEEEEEEcccGGGccEEEEETTEEEEEEccccccccHHHHHHHHHTTccccEEEEEcHHHHHHHHHTccEEEEccccTTccccHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHcccGGGEEEccccccTTTcccccHHHHHHTTcccccEEEEEEccccGGGcHHHHHHHHHHHHHHcTTccEEEEEEcccccHHHHHHHHTTcTTTEEEEccccHHHHHHHHHHccEEEEccccTcTTcccccHHHHHHHHTTccEEEEccTTHHHHcccTTTEEEEccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DISOP:02AL 341-342| PSIPRED cHHHHHHHHcccEEEEEEcccccccccccccccEEEEEcccccccccHHHHHHHHHHHHccccEEEEccHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHccEEEEccHHHHHHHHHccccHHHEEEEcccccHHHccccccHHHHHHccccccEEEEEEEEccHHccHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHccEEEEcccccccccccccHHHHHHHHccccEEEEccccHHHHHcccccEEEEccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHc //