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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : amtB
DDBJ      :amtB         ammonium transporter
Swiss-Prot:             

Homologs  Archaea  41/68 : Bacteria  605/915 : Eukaryota  133/199 : Viruses  0/175   --->[See Alignment]
f.44.1
:433 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   45->429 2nuuD PDBj 1e-20 31.6 %
:RPS:PDB   40->429 2b2fA PDBj 5e-66 29.0 %
:RPS:SCOP  40->410 1u77A  f.44.1.1 * 8e-52 25.7 %
:HMM:SCOP  39->410 1u7gA_ f.44.1.1 * 4.4e-97 41.6 %
:RPS:PFM   42->425 PF00909 * Ammonium_transp 5e-43 38.2 %
:HMM:PFM   43->429 PF00909 * Ammonium_transp 3.5e-98 43.2 377/399  
:BLT:SWISS 53->429 Y108_SYNY3 6e-57 43.8 %
:PROS 187->212|PS01219|AMMONIUM_TRANSP
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21635.1 GT:GENE amtB GT:PRODUCT ammonium transporter GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 792013..793314 GB:FROM 792013 GB:TO 793314 GB:DIRECTION + GB:GENE amtB GB:PRODUCT ammonium transporter GB:PROTEIN_ID AAZ21635.1 GB:DB_XREF GI:71062632 GB:GENE:GENE amtB LENGTH 433 SQ:AASEQ MIKIIKKISVPLISLFFLINMSSAGIAETNISAEVGFVFNTLLFLICGFLVMFMAAGFAMLESGMVTSKSVSVICAKNIGLYAISGIMFWLVGYNLAYGIPEGGYIGTFTPWSDSSSLEAGYSAGSDWFFQMVFCATTVSICSGAMAERIKLWPFFLFAAILSGVIYPIVMGWQWGGGWLATIGFSDFAGSTLVHSTGGAAALAGIIILGPRFGRFDSKGNPKAIQPFAASSIPLVTIGVFVLWLGWFGFNGGSQLALGSFADAVAISTIFINTNLAACGGVLAAAVVTRLLFGKTDVIQMLNGAIGGLVAITAEPLAPSPLAAILIGAVGGVIVVFGTKLLFSFKLDDVVGAIPAHMFAGIFGTLVVPITNADATFGAQLIGVLSINIFVFVVAYIVWSIMNSLFGIRLSKEAQAKGTDVTETGVIAYAIRD GT:EXON 1|1-433:0| BL:SWS:NREP 1 BL:SWS:REP 53->429|Y108_SYNY3|6e-57|43.8|368/507| PROS 187->212|PS01219|AMMONIUM_TRANSP|PDOC00937| TM:NTM 10 TM:REGION 8->30| TM:REGION 37->59| TM:REGION 71->93| TM:REGION 126->148| TM:REGION 151->173| TM:REGION 195->217| TM:REGION 226->248| TM:REGION 274->296| TM:REGION 322->344| TM:REGION 383->405| SEG 198->210|ggaaalagiiilg| SEG 276->288|laacggvlaaavv| SEG 322->336|laailigavggvivv| BL:PDB:NREP 1 BL:PDB:REP 45->429|2nuuD|1e-20|31.6|370/410| RP:PDB:NREP 1 RP:PDB:REP 40->429|2b2fA|5e-66|29.0|373/391| RP:PFM:NREP 1 RP:PFM:REP 42->425|PF00909|5e-43|38.2|374/395|Ammonium_transp| HM:PFM:NREP 1 HM:PFM:REP 43->429|PF00909|3.5e-98|43.2|377/399|Ammonium_transp| GO:PFM:NREP 4 GO:PFM GO:0006810|"GO:transport"|PF00909|IPR001905| GO:PFM GO:0008519|"GO:ammonium transmembrane transporter activity"|PF00909|IPR001905| GO:PFM GO:0016020|"GO:membrane"|PF00909|IPR001905| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00909|IPR001905| RP:SCP:NREP 1 RP:SCP:REP 40->410|1u77A|8e-52|25.7|358/383|f.44.1.1| HM:SCP:REP 39->410|1u7gA_|4.4e-97|41.6|356/383|f.44.1.1|1/1|Ammonium transporter| OP:NHOMO 1452 OP:NHOMOORG 779 OP:PATTERN --------111111-----1-1121--112111121222233122212113311-------1----11 2221---111111-22211-13--2311111-32222322-11111--1--1--11----111-1-111111111111--1-111212--111--------2-1114111---------------2312122212211-111113-5122113112211111133212213111111112111211--1--211--1-1111-111111112211111-11111111111112-11111111111111-1111-1111111-1-111111-1-111------1----1----------------------------111----11-13------------22------1--1111111311---1111-2---1131111-----121221-111--111111111111-22-21-1-114-111111111111-111212-11111231111111112211212-----------------------------422111111-12222222111122221111112222222-122152---1322212322323131111111---242-3231232122112-222222233222312-11--1----------------2122233112122212131222222222211111112----112------11--1111111111111-11111111111111111111111-1111111111111111111-11111111-111111111111-------------43213------------11-22222131111222122223323223221---------41112-11111222211--------1111113-331122---------------------------------222-11--1-11111- ----333-----1114252433334431111111112222221---122234431232222252213112314233323323343322-24222372-2-122443-2L4H------------------------------------------------23A-7551112-54B327A5*42452C56C5527633649 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 404 STR:RPRED 93.3 SQ:SECSTR #########################ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHccEETTTEEccTTGGGTTcEETcTHHHHHHHHHHHHHHHHHHHHGGGGTTTccHHHHHHHHHHHHHHTHHHHHHHHHcccHHHHTTccccccTTTTHHHHHHHHHHHHHHHcccTTTTTHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHGGGccccTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHTTTTTTccHHHHHHHHHHHHHHHHHHHHHHHHTTcccTTcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHcHHHHHHccccc#### DISOP:02AL 1-3, 214-230, 431-433| PSIPRED ccHHHHHHHHHHHHHHHHHHcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHccccccccc //