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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : argS
DDBJ      :argS         arginine-tRNA ligase
Swiss-Prot:SYR_PELUB    RecName: Full=Arginyl-tRNA synthetase;         EC=6.1.1.19;AltName: Full=Arginine--tRNA ligase;         Short=ArgRS;

Homologs  Archaea  62/68 : Bacteria  727/915 : Eukaryota  70/199 : Viruses  0/175   --->[See Alignment]
a.27.1c.26.1d.67.2
:577 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   99->577 3fnrA PDBj 6e-62 32.0 %
:RPS:PDB   24->577 1bs2A PDBj 7e-33 16.4 %
:RPS:SCOP  33->97 1iq0A3  d.67.2.1 * 6e-09 22.6 %
:RPS:SCOP  121->441 1bs2A2  c.26.1.1 * 5e-41 20.2 %
:RPS:SCOP  452->577 1iq0A1  a.27.1.1 * 2e-25 21.7 %
:HMM:SCOP  1->115 1bs2A3 d.67.2.1 * 1.7e-16 33.0 %
:HMM:SCOP  116->465 1bs2A2 c.26.1.1 * 2.8e-73 33.5 %
:HMM:SCOP  447->577 1iq0A1 a.27.1.1 * 3.4e-30 29.6 %
:RPS:PFM   38->92 PF03485 * Arg_tRNA_synt_N 8e-07 46.3 %
:RPS:PFM   117->420 PF00750 * tRNA-synt_1d 6e-42 39.2 %
:RPS:PFM   453->577 PF05746 * DALR_1 1e-18 36.4 %
:HMM:PFM   107->428 PF00750 * tRNA-synt_1d 1.1e-61 31.9 304/354  
:HMM:PFM   453->577 PF05746 * DALR_1 4.6e-27 34.7 118/119  
:HMM:PFM   28->95 PF03485 * Arg_tRNA_synt_N 9.9e-18 34.3 67/83  
:BLT:SWISS 1->577 SYR_PELUB 0.0 100.0 %
:PROS 134->143|PS00178|AA_TRNA_LIGASE_I
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21778.1 GT:GENE argS GT:PRODUCT arginine-tRNA ligase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 952702..954435 GB:FROM 952702 GB:TO 954435 GB:DIRECTION + GB:GENE argS GB:PRODUCT arginine-tRNA ligase GB:PROTEIN_ID AAZ21778.1 GB:DB_XREF GI:71062775 GB:GENE:GENE argS LENGTH 577 SQ:AASEQ MNIFDLYLDKIIILIKKLNKDGSLELPESLNGVNVDIPPSNFDCDISTNVAMVLSKANKKSPIDIANILIELIKNEDEKIESISAAKPGFINIKFKTIYWNNFIKSINQNHKDYGVNNKEKKQKYLIEFVSANPTGPLHVGHCRGAILGDVISNILIFNKHDVSKEYYVNDYGNQILNFTKSVFFRIREILFNEKFPIENSDLYPGDYLVGIAKNIIKSNKVLKFDKFENVSKELTLLSVSESLKLIKNNLSNLGIVHDRFTSETDIVLNNEVQKAIDKLKEKKLVYSGKIKAPKGEDDENWVEREQLLFKSTDFGDDKDRALQKSDKSWTYFASDVAYHDNKLNRNYDTLINILGADHAGYIKRITSVVEALSGDKKKLICKVSQLVKLIKDGKPFKMSKRKGDYITVEDLIAEVGKDATRFIMLNRSSDVELDFDFTKVKEKSKDNPLYYVQYCYARISSVFRHVNLNIENDLNIKDYEFAYTGDEIKILKKIAEWPKCIEAASLRLEPHRIPVYLYELSSEFHSYWNMGKEDQSKRFINEQKKISNDKLVFLKVISNVIKSGMDIVGVDTPQKM GT:EXON 1|1-577:0| SW:ID SYR_PELUB SW:DE RecName: Full=Arginyl-tRNA synthetase; EC=6.1.1.19;AltName: Full=Arginine--tRNA ligase; Short=ArgRS; SW:GN Name=argS; OrderedLocusNames=SAR11_0970; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->577|SYR_PELUB|0.0|100.0|577/577| GO:SWS:NREP 6 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 134->143|PS00178|AA_TRNA_LIGASE_I|PDOC00161| SEG 5->21|dlyldkiiilikklnkd| SEG 243->254|slkliknnlsnl| BL:PDB:NREP 1 BL:PDB:REP 99->577|3fnrA|6e-62|32.0|440/449| RP:PDB:NREP 1 RP:PDB:REP 24->577|1bs2A|7e-33|16.4|535/603| RP:PFM:NREP 3 RP:PFM:REP 38->92|PF03485|8e-07|46.3|54/85|Arg_tRNA_synt_N| RP:PFM:REP 117->420|PF00750|6e-42|39.2|286/350|tRNA-synt_1d| RP:PFM:REP 453->577|PF05746|1e-18|36.4|118/118|DALR_1| HM:PFM:NREP 3 HM:PFM:REP 107->428|PF00750|1.1e-61|31.9|304/354|tRNA-synt_1d| HM:PFM:REP 453->577|PF05746|4.6e-27|34.7|118/119|DALR_1| HM:PFM:REP 28->95|PF03485|9.9e-18|34.3|67/83|Arg_tRNA_synt_N| GO:PFM:NREP 15 GO:PFM GO:0000166|"GO:nucleotide binding"|PF03485|IPR005148| GO:PFM GO:0004814|"GO:arginine-tRNA ligase activity"|PF03485|IPR005148| GO:PFM GO:0005524|"GO:ATP binding"|PF03485|IPR005148| GO:PFM GO:0005737|"GO:cytoplasm"|PF03485|IPR005148| GO:PFM GO:0006412|"GO:translation"|PF03485|IPR005148| GO:PFM GO:0006420|"GO:arginyl-tRNA aminoacylation"|PF03485|IPR005148| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00750|IPR015945| GO:PFM GO:0004814|"GO:arginine-tRNA ligase activity"|PF00750|IPR015945| GO:PFM GO:0005524|"GO:ATP binding"|PF00750|IPR015945| GO:PFM GO:0005737|"GO:cytoplasm"|PF00750|IPR015945| GO:PFM GO:0006412|"GO:translation"|PF00750|IPR015945| GO:PFM GO:0006420|"GO:arginyl-tRNA aminoacylation"|PF00750|IPR015945| GO:PFM GO:0004814|"GO:arginine-tRNA ligase activity"|PF05746|IPR008909| GO:PFM GO:0005524|"GO:ATP binding"|PF05746|IPR008909| GO:PFM GO:0006420|"GO:arginyl-tRNA aminoacylation"|PF05746|IPR008909| RP:SCP:NREP 3 RP:SCP:REP 33->97|1iq0A3|6e-09|22.6|62/96|d.67.2.1| RP:SCP:REP 121->441|1bs2A2|5e-41|20.2|297/348|c.26.1.1| RP:SCP:REP 452->577|1iq0A1|2e-25|21.7|120/126|a.27.1.1| HM:SCP:REP 1->115|1bs2A3|1.7e-16|33.0|106/131|d.67.2.1|1/1|Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain| HM:SCP:REP 116->465|1bs2A2|2.8e-73|33.5|322/348|c.26.1.1|1/1|Nucleotidylyl transferase| HM:SCP:REP 447->577|1iq0A1|3.4e-30|29.6|125/126|a.27.1.1|1/1|Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases| OP:NHOMO 883 OP:NHOMOORG 859 OP:PATTERN ---1111111111111111111111--11111111111111111111111111111111111111-11 ---111111111111-111-1111111111111111111111111-11111111111111111111111-111111111111111111111111--1--11111-1-1111111-1111-1111111111111111-----111--11111111111------111111111-11111--111-----111-1111111122111111121111111211121--111111-111111111111111111111--1----1---------------1111111-11-11111111111111111111111111-11111111111111-------1-1111111112111-1111111111111111111111111111-11111112111111111111111111111-11112111111111111111111111---111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111--1111111111111111111111111111111-111-111-1111111111111111111--11111-1-111----------------------------------------------------------------------1---------------11111111111111111111-11111-11-111-111111--11111111111111111111111111111111111111-11111111111111111111111111111111111------1-111121111111111111111111111111-1 -----11-211---------------------------------------11-11-----------1---1--------------------------1--------11111-2111------1111-11151-11111--1-1111----1----11121331111-111-1-121----11------1-11111111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 554 STR:RPRED 96.0 SQ:SECSTR #######################ccccHHHHHHHccccccGGGccEEEEGGGGccTHHTccHHHHHHHHHHHccccTTTEEEEEEETTEEEEEEcHHHHHHHHHHHHHHHGGGTTccccccccEEEEEcccccTTccccHHHHHHHHHHHHHHHHHHHTTcEEEEEcccccccHHHHTHHHHccHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHcccccTTTcHHHHHHHHHTTcccccTTTTTTHHHHHHHHHHHHHHHHHTHTTcccccccccTTccHHHHHHHHHHHHHHTcccccTTcEEEEGGGTcTTccEEEEEETTTEEcHHHHHHHHHHHHHHHHccEEEEEccGGGHHHHHHHHHHHHHTcEEcccccTTcccccHHHHHHHHHHHHHHcTTTcccHHHHHHHHHHHHHHHHHcccTTccEEccHHHHHcccccccHHHHHHHHHHHHHHHccccTTHHHHHHTccGGGcccHHHHHHHHHHHTHHHHHHHHHHHTcTHHHHHHHHHHHHHHHHHHHHHcHHHHcccTTccHHHHHHHHHHHHHHHHHHHHHHHHHTccccccc DISOP:02AL 396-403| PSIPRED ccHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccEEccHHHHHHHHHcccHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEcHHHHHHHHHHHHHcHHHccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEcHHHHHHHHHHHHcccEEEcccccccccccccEEEcHHccccccccccccccEEEEcccccEEHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEccEEEEEEEccccEEEHHHHHHHHHHHHHHHHHHHccccccEEEcHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccc //