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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : asd
DDBJ      :asd          aspartate-semialdehyde dehydrogenase
Swiss-Prot:             

Homologs  Archaea  60/68 : Bacteria  850/915 : Eukaryota  71/199 : Viruses  0/175   --->[See Alignment]
c.2.1d.81.1
:333 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->329 2qz9B PDBj 9e-87 48.2 %
:RPS:PDB   1->327 1brmC PDBj 1e-42 23.5 %
:RPS:SCOP  3->153 2gyyA1  c.2.1.3 * 7e-30 35.2 %
:RPS:SCOP  125->315 1brmA2  d.81.1.1 * 3e-65 31.7 %
:HMM:SCOP  1->154 2gz1A1 c.2.1.3 * 7.6e-50 47.1 %
:HMM:SCOP  125->315 1brmA2 d.81.1.1 * 9.5e-78 48.2 %
:RPS:PFM   3->113 PF01118 * Semialdhyde_dh 2e-13 42.2 %
:RPS:PFM   135->314 PF02774 * Semialdhyde_dhC 3e-30 48.1 %
:HMM:PFM   135->313 PF02774 * Semialdhyde_dhC 2e-55 39.9 178/184  
:HMM:PFM   2->114 PF01118 * Semialdhyde_dh 2e-31 40.2 112/121  
:BLT:SWISS 3->330 DHAS_AQUAE 7e-89 50.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21067.1 GT:GENE asd GT:PRODUCT aspartate-semialdehyde dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(247635..248636) GB:FROM 247635 GB:TO 248636 GB:DIRECTION - GB:GENE asd GB:PRODUCT aspartate-semialdehyde dehydrogenase GB:PROTEIN_ID AAZ21067.1 GB:DB_XREF GI:71062064 GB:GENE:GENE asd LENGTH 333 SQ:AASEQ MNIAIVGASGNVGRKMLEVLEQKKISIEQLFLVASSRSAGQKVNFNGKEHEIFNLETYDFSKAEITFFAAGGKISEKYAEKAAKHTTVIDNSSFFRMDQDVPLIVPQVNPEAINVLKKNIIANPNCSTAQLVIALKPLHDEFNIKRVVISTYQSVSGGGKASMDELIEQTKLSLDKKKINSKNFTKQIAFNAIPHIDVFADDGYTKEELKMVNETKKILDDKIELTATCVRIPVLVSHAESVNIEFEKPFSLQTIHSLLDSAEGCEVYDKREDGGYITPLEAEGKNETYISRIREDKTKKNTLNMWIVSDNLLRGAALNAVEIAELLIRKNNG GT:EXON 1|1-333:0| BL:SWS:NREP 1 BL:SWS:REP 3->330|DHAS_AQUAE|7e-89|50.6|328/340| BL:PDB:NREP 1 BL:PDB:REP 2->329|2qz9B|9e-87|48.2|326/335| RP:PDB:NREP 1 RP:PDB:REP 1->327|1brmC|1e-42|23.5|327/359| RP:PFM:NREP 2 RP:PFM:REP 3->113|PF01118|2e-13|42.2|109/120|Semialdhyde_dh| RP:PFM:REP 135->314|PF02774|3e-30|48.1|162/165|Semialdhyde_dhC| HM:PFM:NREP 2 HM:PFM:REP 135->313|PF02774|2e-55|39.9|178/184|Semialdhyde_dhC| HM:PFM:REP 2->114|PF01118|2e-31|40.2|112/121|Semialdhyde_dh| GO:PFM:NREP 8 GO:PFM GO:0005737|"GO:cytoplasm"|PF01118|IPR000534| GO:PFM GO:0006520|"GO:cellular amino acid metabolic process"|PF01118|IPR000534| GO:PFM GO:0016620|"GO:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"|PF01118|IPR000534| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01118|IPR000534| GO:PFM GO:0005737|"GO:cytoplasm"|PF02774|IPR012280| GO:PFM GO:0008652|"GO:cellular amino acid biosynthetic process"|PF02774|IPR012280| GO:PFM GO:0016620|"GO:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"|PF02774|IPR012280| GO:PFM GO:0046983|"GO:protein dimerization activity"|PF02774|IPR012280| RP:SCP:NREP 2 RP:SCP:REP 3->153|2gyyA1|7e-30|35.2|145/150|c.2.1.3| RP:SCP:REP 125->315|1brmA2|3e-65|31.7|180/210|d.81.1.1| HM:SCP:REP 1->154|2gz1A1|7.6e-50|47.1|153/0|c.2.1.3|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 125->315|1brmA2|9.5e-78|48.2|191/0|d.81.1.1|1/1|Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain| OP:NHOMO 1197 OP:NHOMOORG 981 OP:PATTERN 11-1--2322222222-11111111111111111111111111-111111111111111-211-1-11 2111211111111111111-1111111111111111111112111111111111111111221111122211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222212222221111112221111111111111111111111111111111111111-1111111-121111-11111111111111111111111111111-------------111111111111122111111111111111111111-111111111111121111111-1111222111111112221111111111111111111-111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111-1-111111111111111111111-11111111111111-11111111-111111122111111111111111111111111111122212121222222112111111111111111111111111111222211111221111111111111111111-11111111111122222222222222222-2222222222222222222333222222222222222222222222222222-22222222222211211111111111211111121122222211211111111112122222222222222222111--1111122222222222222111111111111111111111111----------1-------------------------1111111111111 ------1-----111-------1-----------------------11----------1---111111111111111-1111111111-121---11111-1-111--1-------------------------------------------------1--------------1-1111G112111113-111121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 330 STR:RPRED 99.1 SQ:SECSTR EEEEEEcTTcHHHHHHHHHHHHTGGGcEEEEEcccccTTcccccTTccccccccTTcHHHHTccEEEEcccHHHHHHHHHHHHTTTcEEEcccTTTTcTTEEEEcHHHHHHHHHHHHHTEEEEccHHHHHHHHHHHHHHTTTcEEEEEEEEEEccTTTcHHHHHHHHHHHHHHHHTTHHHHTTTcccccTTTccccTTcccccccccccccHHHHHHHTcccccEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHcTTcccccHHHHHHHccHHHHTTcccccEEEEEEcTTcTTEEEEEEEEETTcccccHHHHHHHHHHHHH### DISOP:02AL 332-333| PSIPRED cEEEEEEcccHHHHHHHHHHHcccccEEEEEEEEccccccccccccccEEEEEcccccccccccEEEEcccHHHHHHHHHHHHcccEEEEcccccccccccEEEEccccHHHHHHccccEEEcccccHHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEEEEcccccHHHHHHHHHHccccEEEEEcccccccccHHHcccccEEEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHcc //