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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : atpA
DDBJ      :atpA         H+-transporting two-sector ATPase (F0F1-type ATP synthase) alpha chain
Swiss-Prot:ATPA_PELUB   RecName: Full=ATP synthase subunit alpha;         EC=3.6.3.14;AltName: Full=F-ATPase subunit alpha;AltName: Full=ATP synthase F1 sector subunit alpha;

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
a.69.1b.49.1c.37.1
:511 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   13->511 1w0jC PDBj 0.0 70.1 %
:RPS:PDB   19->465 3a5cD PDBj e-119 24.9 %
:RPS:SCOP  24->94 1bmfA2  b.49.1.1 * 1e-16 71.8 %
:RPS:SCOP  95->380 1bmfA3  c.37.1.11 * 6e-21 81.4 %
:RPS:SCOP  381->511 1bmfA1  a.69.1.1 * 1e-30 48.9 %
:HMM:SCOP  9->94 1mabA2 b.49.1.1 * 4.1e-32 62.8 %
:HMM:SCOP  95->380 1e79A3 c.37.1.11 * 2.3e-109 49.5 %
:HMM:SCOP  381->511 1e79A1 a.69.1.1 * 2.4e-46 51.1 %
:RPS:PFM   149->373 PF00006 * ATP-synt_ab 4e-29 36.8 %
:RPS:PFM   385->457 PF00306 * ATP-synt_ab_C 6e-07 41.1 %
:HMM:PFM   149->373 PF00006 * ATP-synt_ab 9.2e-76 34.9 215/215  
:HMM:PFM   385->475 PF00306 * ATP-synt_ab_C 1.1e-25 46.1 89/113  
:HMM:PFM   26->92 PF02874 * ATP-synt_ab_N 1.3e-21 38.8 67/69  
:BLT:SWISS 1->511 ATPA_PELUB 0.0 100.0 %
:PROS 364->373|PS00152|ATPASE_ALPHA_BETA
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21053.1 GT:GENE atpA GT:PRODUCT H+-transporting two-sector ATPase (F0F1-type ATP synthase) alpha chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(230059..231594) GB:FROM 230059 GB:TO 231594 GB:DIRECTION - GB:GENE atpA GB:PRODUCT H+-transporting two-sector ATPase (F0F1-type ATP synthase) alpha chain GB:PROTEIN_ID AAZ21053.1 GB:DB_XREF GI:71062050 GB:GENE:GENE atpA LENGTH 511 SQ:AASEQ MDINPSEVTKILKEQIKKFGDKAEVTEVGQVLSVGDGIARVYGLDNVQAGEMVEFSDGSKGMALNLESENVGVVIFGDDRKIKEGDVVKRTGSIVDTPVGKELLGRVVDGLGNPIDGKGALDKATKRSRVEVKAPGIIPRQSVSEPMQTGLKSIDSLVPVGRGQRELIIGDRQTGKTAVAIDAIINQKKINESGDEKQKLYCIYVAIGQKRSTVRQIQKTLEEAGAMEYTTIVAATASDAAPLQFLAPYTGCTMGEYYRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEHGGGSLTALPIIETQGGDVSAFIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQTKAMKKVSGSMKLELAQYREMAAFAQFGSDLDASTQKLLNRGSKLTELLKQKQYSPMTVAEQVISVFCGVKGYLDDVELKDIAEFESKIIEKCKSEKPEILESVLSSGKLEEDTEKSLVDTIMELKKNFNS GT:EXON 1|1-511:0| SW:ID ATPA_PELUB SW:DE RecName: Full=ATP synthase subunit alpha; EC=3.6.3.14;AltName: Full=F-ATPase subunit alpha;AltName: Full=ATP synthase F1 sector subunit alpha; SW:GN Name=atpA; OrderedLocusNames=SAR11_0232; SW:KW ATP synthesis; ATP-binding; Cell inner membrane; Cell membrane; CF(1);Complete proteome; Hydrogen ion transport; Hydrolase; Ion transport;Membrane; Nucleotide-binding; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->511|ATPA_PELUB|0.0|100.0|511/511| GO:SWS:NREP 11 GO:SWS GO:0006754|"GO:ATP biosynthetic process"|ATP synthesis| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005886|"GO:plasma membrane"|Cell inner membrane| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0045261|"GO:proton-transporting ATP synthase complex, catalytic core F(1)"|CF(1)| GO:SWS GO:0015992|"GO:proton transport"|Hydrogen ion transport| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0006811|"GO:ion transport"|Ion transport| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 364->373|PS00152|ATPASE_ALPHA_BETA|PDOC00137| SEG 466->480|eskiiekcksekpei| BL:PDB:NREP 1 BL:PDB:REP 13->511|1w0jC|0.0|70.1|498/498| RP:PDB:NREP 1 RP:PDB:REP 19->465|3a5cD|e-119|24.9|422/450| RP:PFM:NREP 2 RP:PFM:REP 149->373|PF00006|4e-29|36.8|212/212|ATP-synt_ab| RP:PFM:REP 385->457|PF00306|6e-07|41.1|73/106|ATP-synt_ab_C| HM:PFM:NREP 3 HM:PFM:REP 149->373|PF00006|9.2e-76|34.9|215/215|ATP-synt_ab| HM:PFM:REP 385->475|PF00306|1.1e-25|46.1|89/113|ATP-synt_ab_C| HM:PFM:REP 26->92|PF02874|1.3e-21|38.8|67/69|ATP-synt_ab_N| GO:PFM:NREP 4 GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| GO:PFM GO:0015986|"GO:ATP synthesis coupled proton transport"|PF00306|IPR000793| GO:PFM GO:0016820|"GO:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"|PF00306|IPR000793| GO:PFM GO:0033178|"GO:proton-transporting two-sector ATPase complex, catalytic domain"|PF00306|IPR000793| RP:SCP:NREP 3 RP:SCP:REP 24->94|1bmfA2|1e-16|71.8|71/71|b.49.1.1| RP:SCP:REP 95->380|1bmfA3|6e-21|81.4|285/285|c.37.1.11| RP:SCP:REP 381->511|1bmfA1|1e-30|48.9|131/131|a.69.1.1| HM:SCP:REP 9->94|1mabA2|4.1e-32|62.8|86/86|b.49.1.1|1/1|N-terminal domain of alpha and beta subunits of F1 ATP synthase| HM:SCP:REP 95->380|1e79A3|2.3e-109|49.5|285/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 381->511|1e79A1|2.4e-46|51.1|131/131|a.69.1.1|1/1|C-terminal domain of alpha and beta subunits of F1 ATP synthase|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p6-5754424825785532253364E56766B56445A35C59556555i4465499DH4A65453444 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 285-289, 291-292| PSIPRED ccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEccccccccccccccccEEEEccccEEEEEcccccEEEEEEEccccccccccEEEEccccccccccHHHHHHEEEcccEEEccccccccccccEEcccccccccccccccccHHccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEEEEcccccccHHHHHHHHHcccEEEEEHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc //