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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : atpD
DDBJ      :atpD         F1-ATP Synthase Beta Chain
Swiss-Prot:ATPB_PELUB   RecName: Full=ATP synthase subunit beta;         EC=3.6.3.14;AltName: Full=F-ATPase subunit beta;AltName: Full=ATP synthase F1 sector subunit beta;

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
a.69.1b.49.1c.37.1
:472 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->456 1mabB PDBj 0.0 83.2 %
:RPS:PDB   2->456 2ck3D PDBj e-147 79.6 %
:RPS:SCOP  2->74 1bmfD2  b.49.1.1 * 3e-22 65.8 %
:RPS:SCOP  75->350 1bmfD3  c.37.1.11 * 3e-89 82.2 %
:RPS:SCOP  351->456 1bmfD1  a.69.1.1 * 5e-30 82.1 %
:HMM:SCOP  2->74 1mabB2 b.49.1.1 * 1.3e-25 52.1 %
:HMM:SCOP  75->355 1e79A3 c.37.1.11 * 1.2e-99 44.5 %
:HMM:SCOP  351->468 1e79D1 a.69.1.1 * 1.4e-53 77.1 %
:RPS:PFM   8->72 PF02874 * ATP-synt_ab_N 5e-13 58.5 %
:RPS:PFM   128->348 PF00006 * ATP-synt_ab 8e-36 41.7 %
:RPS:PFM   363->456 PF00306 * ATP-synt_ab_C 6e-26 61.7 %
:HMM:PFM   128->348 PF00006 * ATP-synt_ab 7.7e-65 34.6 211/215  
:HMM:PFM   362->466 PF00306 * ATP-synt_ab_C 9.5e-31 34.7 101/113  
:HMM:PFM   6->72 PF02874 * ATP-synt_ab_N 6.7e-25 55.2 67/69  
:BLT:SWISS 1->456 ATPB_PELUB 0.0 100.0 %
:PROS 339->348|PS00152|ATPASE_ALPHA_BETA
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21051.1 GT:GENE atpD GT:PRODUCT F1-ATP Synthase Beta Chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(227759..229177) GB:FROM 227759 GB:TO 229177 GB:DIRECTION - GB:GENE atpD GB:PRODUCT F1-ATP Synthase Beta Chain GB:PROTEIN_ID AAZ21051.1 GB:DB_XREF GI:71062048 GB:GENE:GENE atpD LENGTH 472 SQ:AASEQ MSKGKITQIIGAVVDVKFDGELPEILSALECKNGDNRLVLEVAQHLGESSVRTIAMDATEGLKRGDEVTATGAPIQVPVGPETLGRIINVIGEPIDEKGEVKTKEKWPIHRAAPEFSDQSTETEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYHEMIDSGVIKPEGPGSKAALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGNLQERITTTNKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRQIAEIGIYPAVDPLDSTSRILDPRIVGDEHYRVAREVQKILQTYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEVFTGSPGKLVDLESTIKGFAAICNGEYDHLPEAAFYMVGTIEEAVEKAEKMAKDAAA GT:EXON 1|1-472:0| SW:ID ATPB_PELUB SW:DE RecName: Full=ATP synthase subunit beta; EC=3.6.3.14;AltName: Full=F-ATPase subunit beta;AltName: Full=ATP synthase F1 sector subunit beta; SW:GN Name=atpD; OrderedLocusNames=SAR11_0230; SW:KW ATP synthesis; ATP-binding; Cell inner membrane; Cell membrane; CF(1);Complete proteome; Hydrogen ion transport; Hydrolase; Ion transport;Membrane; Nucleotide-binding; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->456|ATPB_PELUB|0.0|100.0|456/472| GO:SWS:NREP 11 GO:SWS GO:0006754|"GO:ATP biosynthetic process"|ATP synthesis| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005886|"GO:plasma membrane"|Cell inner membrane| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0045261|"GO:proton-transporting ATP synthase complex, catalytic core F(1)"|CF(1)| GO:SWS GO:0015992|"GO:proton transport"|Hydrogen ion transport| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0006811|"GO:ion transport"|Ion transport| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 339->348|PS00152|ATPASE_ALPHA_BETA|PDOC00137| SEG 141->155|kggkiglfggagvgk| SEG 457->471|eeavekaekmakdaa| BL:PDB:NREP 1 BL:PDB:REP 4->456|1mabB|0.0|83.2|453/477| RP:PDB:NREP 1 RP:PDB:REP 2->456|2ck3D|e-147|79.6|455/467| RP:PFM:NREP 3 RP:PFM:REP 8->72|PF02874|5e-13|58.5|65/68|ATP-synt_ab_N| RP:PFM:REP 128->348|PF00006|8e-36|41.7|211/212|ATP-synt_ab| RP:PFM:REP 363->456|PF00306|6e-26|61.7|94/106|ATP-synt_ab_C| HM:PFM:NREP 3 HM:PFM:REP 128->348|PF00006|7.7e-65|34.6|211/215|ATP-synt_ab| HM:PFM:REP 362->466|PF00306|9.5e-31|34.7|101/113|ATP-synt_ab_C| HM:PFM:REP 6->72|PF02874|6.7e-25|55.2|67/69|ATP-synt_ab_N| GO:PFM:NREP 9 GO:PFM GO:0015992|"GO:proton transport"|PF02874|IPR004100| GO:PFM GO:0016469|"GO:proton-transporting two-sector ATPase complex"|PF02874|IPR004100| GO:PFM GO:0046034|"GO:ATP metabolic process"|PF02874|IPR004100| GO:PFM GO:0046933|"GO:hydrogen ion transporting ATP synthase activity, rotational mechanism"|PF02874|IPR004100| GO:PFM GO:0046961|"GO:proton-transporting ATPase activity, rotational mechanism"|PF02874|IPR004100| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| GO:PFM GO:0015986|"GO:ATP synthesis coupled proton transport"|PF00306|IPR000793| GO:PFM GO:0016820|"GO:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"|PF00306|IPR000793| GO:PFM GO:0033178|"GO:proton-transporting two-sector ATPase complex, catalytic domain"|PF00306|IPR000793| RP:SCP:NREP 3 RP:SCP:REP 2->74|1bmfD2|3e-22|65.8|73/73|b.49.1.1| RP:SCP:REP 75->350|1bmfD3|3e-89|82.2|276/276|c.37.1.11| RP:SCP:REP 351->456|1bmfD1|5e-30|82.1|106/118|a.69.1.1| HM:SCP:REP 2->74|1mabB2|1.3e-25|52.1|73/0|b.49.1.1|1/2|N-terminal domain of alpha and beta subunits of F1 ATP synthase| HM:SCP:REP 75->355|1e79A3|1.2e-99|44.5|274/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 351->468|1e79D1|1.4e-53|77.1|118/118|a.69.1.1|1/1|C-terminal domain of alpha and beta subunits of F1 ATP synthase| OP:NHOMO 3968 OP:NHOMOORG 1171 OP:PATTERN 22222222222222222222222222222222222222222222222622442222222222222222 3333222222222222222-22222222222222222222322232223223232222222232322222222222222222233733333323112222222222223244444444444444543222224224222222222344224422222222222422222222222222222222222244233333333333333333333333333333333335555553422222222222222222222422222222222222222222222222222222422422444242424444444444444422222222233333555555555535335444755443553333333353333333544335333332222535343333433433333333333-4444434444334333445333333233353364653332222222223352363222222222222222222222222222222223333444354446547575446588893834843332233433433342543335433363222222235523333523453335444433333357756553262333323333333333333333353222352333335352534355433343344443222533333133343344353553333233-543344333353523322322244544555555555555555532334334635666665565652242222223555427352222222222222222222222222534434333353333345422222222233336333337653333444444452222223433333323332333356----2-35332423235322643333233353353432 4454334-G6524444445444444454444344443444434344334444423443444444444424444444434444444444-464444644444449CC245385977844334473853836a6-5754424615684432143364B56757B55456B45C57446444m333339ADD4954463334 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 456 STR:RPRED 96.6 SQ:SECSTR ccEEEEEEEETTEEEEEEccccccTTcEEEEcccccccEEEEEEEEETTEEEEEEccccTTccTTcEEEEcccccEEEccGGGcTcEEcTTccccccccccccccEEEcccccccGGGccccccEEccccHHHHHHccEETTcEEEEEEcTTccHHHHHHHHHHHTTTTcccEEEEEEEcccHHHHHHHHHHHHHHTccccccccccEEEEEEcTTccHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEcTHHHHHHHHHHHGGGTccccGGGccTTHHHHHHHHHTTccccccccEEEEEEEEcGGGcTTcHHHHHHGGGccEEEEccHHHHTTTccccccTTccEETTccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGccHHHHHHHHHHHHHHHHTccccGGGHHHHccccccccHHHHHHHHHHHHTTTTTTccGGGGTTcccH################ DISOP:02AL 470-472| PSIPRED ccEEEEEEEEccEEEEEEcccccccccEEEEEccccEEEEEEEEEEcccEEEEEEEccccccccccEEEEcccEEEEEccccEEEEEEEEEccccccccccccccEEEcccccccccccccccccHHccHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccHHHHHHHHHccEEEEEEHHHHHccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHHHHHc //