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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : carB
DDBJ      :carB         Carbamoyl-phosphate synthase large chain
Swiss-Prot:             

Homologs  Archaea  55/68 : Bacteria  828/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
a.92.1c.24.1c.30.1c.98.2d.142.1
:1074 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->1066 1bxrA PDBj 0.0 55.1 %
:RPS:PDB   1->1073 1a9xA PDBj 0.0 53.2 %
:RPS:SCOP  1->127 1a9xA3  c.30.1.1 * 1e-18 63.0 %
:RPS:SCOP  128->401 1a9xA5  d.142.1.2 * 3e-72 69.3 %
:RPS:SCOP  402->555 1a9xA1  a.92.1.1 * 1e-36 41.2 %
:RPS:SCOP  590->676 2iojA1  c.98.2.2 * 6e-13 9.3 %
:RPS:SCOP  692->937 1a9xA6  d.142.1.2 * 1e-51 48.9 %
:RPS:SCOP  935->1073 1b93A  c.24.1.2 * 1e-27 19.4 %
:HMM:SCOP  4->130 1a9xA4 c.30.1.1 * 4.8e-50 57.9 %
:HMM:SCOP  128->401 1a9xA5 d.142.1.2 * 4e-106 48.9 %
:HMM:SCOP  395->549 1a9xA1 a.92.1.1 * 2.9e-48 42.8 %
:HMM:SCOP  555->679 1a9xA4 c.30.1.1 * 1.8e-48 53.7 %
:HMM:SCOP  677->937 1a9xA5 d.142.1.2 * 9.3e-102 52.9 %
:HMM:SCOP  938->1074 1a9xA2 c.24.1.1 * 3.1e-35 38.3 %
:RPS:PFM   6->123 PF00289 * CPSase_L_chain 4e-14 34.7 %
:RPS:PFM   128->333 PF02786 * CPSase_L_D2 6e-34 38.1 %
:RPS:PFM   419->541 PF02787 * CPSase_L_D3 2e-29 46.3 %
:RPS:PFM   559->648 PF00289 * CPSase_L_chain 5e-17 58.3 %
:RPS:PFM   697->875 PF02786 * CPSase_L_D2 3e-24 34.2 %
:RPS:PFM   960->1043 PF02142 * MGS 1e-08 36.9 %
:HMM:PFM   128->334 PF02786 * CPSase_L_D2 7.4e-71 40.7 204/211  
:HMM:PFM   677->879 PF02786 * CPSase_L_D2 1.8e-38 24.9 201/211  
:HMM:PFM   419->541 PF02787 * CPSase_L_D3 2.2e-43 44.6 121/121  
:HMM:PFM   7->123 PF00289 * CPSase_L_chain 8.2e-22 29.7 101/110  
:HMM:PFM   559->672 PF00289 * CPSase_L_chain 2.2e-20 32.3 96/110  
:HMM:PFM   960->1046 PF02142 * MGS 2.4e-19 35.6 87/95  
:BLT:SWISS 1->1048 CARB_RHIME 0.0 60.5 %
:PROS 996->1006|PS00626|RCC1_2
:PROS 297->304|PS00867|CPSASE_2
:PROS 842->849|PS00867|CPSASE_2
:REPEAT 2|8->400|559->936
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20866.1 GT:GENE carB GT:PRODUCT Carbamoyl-phosphate synthase large chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 47329..50553 GB:FROM 47329 GB:TO 50553 GB:DIRECTION + GB:GENE carB GB:PRODUCT Carbamoyl-phosphate synthase large chain GB:PROTEIN_ID AAZ20866.1 GB:DB_XREF GI:71061863 GB:GENE:GENE carB LENGTH 1074 SQ:AASEQ MPKRKDLKTILVVGAGPIIIGQACEFDYSGTQACKALKDEGYKVILINSNPATIMTDPGVADKTYIEPITLEVLEKILKKEKPDAILPTMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMLDIGLDLPKSKVVSHIRDAAKALKQIGLPAIIRPAFTLGGLGGGIAKTEKEYLKIVKDGLHESPVNQILIEECLEGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHTGDSITVAPALTLTDKEYQVMRNASIACLRKIGVETGGSNVQFAINPKDGRMVIIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNEITKTTPASFEPSIDYVVTKIPRFTFEKFSTSEAVLGTSMKSVGEAMAIGRNFKESLQKALVSLEIGFSGLDRIFPLNKKQIEKELKKNIPNRILLAAEAFRKKINLKRVHQLCKIDPWFLQQIKEIVDEENNIQKKGLPKDYNEFNRIKSIGFSDKKLSEITKIPEDLVRKKRTALKVLPVYKKVDTCAAEFKSFTPYMYSTYQRNYALNSECEAEPSSRKKIIILGGGPNRIGQGIEFDYCCCQASYALKDSGFETIMINCNPETVSTDYDTSDRLYFEPLKEEYVYNIIKKEQQKGNLVGIIAQFGGQTPIRLAKFLHDNKLPILGTQYTSIDLAEDRDRFRKLLDRLKLKQAESGIAKTYKQAIQIAEKIGLPLMVRPSYVLGGRAMEIVHEKSQLKNFVEEAFKAAEDNPILIDKFISHAMEVDVDAISDGKQVFVAGIMQHIEEAGIHSGDSACCLPPVSIKPKLISEIEIQTKKLALALNVKGFMNIQFAIKNDEIYVIEVNPRASRTVPFVSKAKGLPLAKIASRVMAGEKLSKFNLKNKNKNLYAVKEAVFPFNKFPNSDLLLGPEMKSTGEVMGFDKDFGMAYAKSQIAASNSLPTKGLAFISLKDGHKDEGVDLAKQLIKLNFTLCGTGGTAEYIRKHGIKCKTINKVSGGSPHIVDVLNSKKIALVINTGGGNSEHRLHDAMALRRATLGNKVPYCTNMSTAQACLMGIRSLKTKEITVTALQDI GT:EXON 1|1-1074:0| BL:SWS:NREP 1 BL:SWS:REP 1->1048|CARB_RHIME|0.0|60.5|1046/1163| PROS 996->1006|PS00626|RCC1_2|PDOC00544| PROS 297->304|PS00867|CPSASE_2|PDOC00676| PROS 842->849|PS00867|CPSASE_2|PDOC00676| NREPEAT 1 REPEAT 2|8->400|559->936| SEG 71->82|levlekilkkek| SEG 677->691|drdrfrklldrlklk| SEG 876->889|klskfnlknknknl| BL:PDB:NREP 1 BL:PDB:REP 1->1066|1bxrA|0.0|55.1|1054/1073| RP:PDB:NREP 1 RP:PDB:REP 1->1073|1a9xA|0.0|53.2|1045/1058| RP:PFM:NREP 6 RP:PFM:REP 6->123|PF00289|4e-14|34.7|102/102|CPSase_L_chain| RP:PFM:REP 128->333|PF02786|6e-34|38.1|202/207|CPSase_L_D2| RP:PFM:REP 419->541|PF02787|2e-29|46.3|123/123|CPSase_L_D3| RP:PFM:REP 559->648|PF00289|5e-17|58.3|72/102|CPSase_L_chain| RP:PFM:REP 697->875|PF02786|3e-24|34.2|174/207|CPSase_L_D2| RP:PFM:REP 960->1043|PF02142|1e-08|36.9|84/95|MGS| HM:PFM:NREP 6 HM:PFM:REP 128->334|PF02786|7.4e-71|40.7|204/211|CPSase_L_D2| HM:PFM:REP 677->879|PF02786|1.8e-38|24.9|201/211|CPSase_L_D2| HM:PFM:REP 419->541|PF02787|2.2e-43|44.6|121/121|CPSase_L_D3| HM:PFM:REP 7->123|PF00289|8.2e-22|29.7|101/110|CPSase_L_chain| HM:PFM:REP 559->672|PF00289|2.2e-20|32.3|96/110|CPSase_L_chain| HM:PFM:REP 960->1046|PF02142|2.4e-19|35.6|87/95|MGS| GO:PFM:NREP 12 GO:PFM GO:0003824|"GO:catalytic activity"|PF00289|IPR005481| GO:PFM GO:0008152|"GO:metabolic process"|PF00289|IPR005481| GO:PFM GO:0003824|"GO:catalytic activity"|PF02786|IPR005479| GO:PFM GO:0005524|"GO:ATP binding"|PF02786|IPR005479| GO:PFM GO:0008152|"GO:metabolic process"|PF02786|IPR005479| GO:PFM GO:0004086|"GO:carbamoyl-phosphate synthase activity"|PF02787|IPR005480| GO:PFM GO:0006807|"GO:nitrogen compound metabolic process"|PF02787|IPR005480| GO:PFM GO:0003824|"GO:catalytic activity"|PF00289|IPR005481| GO:PFM GO:0008152|"GO:metabolic process"|PF00289|IPR005481| GO:PFM GO:0003824|"GO:catalytic activity"|PF02786|IPR005479| GO:PFM GO:0005524|"GO:ATP binding"|PF02786|IPR005479| GO:PFM GO:0008152|"GO:metabolic process"|PF02786|IPR005479| RP:SCP:NREP 6 RP:SCP:REP 1->127|1a9xA3|1e-18|63.0|127/127|c.30.1.1| RP:SCP:REP 128->401|1a9xA5|3e-72|69.3|274/275|d.142.1.2| RP:SCP:REP 402->555|1a9xA1|1e-36|41.2|148/153|a.92.1.1| RP:SCP:REP 590->676|2iojA1|6e-13|9.3|86/120|c.98.2.2| RP:SCP:REP 692->937|1a9xA6|1e-51|48.9|231/244|d.142.1.2| RP:SCP:REP 935->1073|1b93A|1e-27|19.4|139/148|c.24.1.2| HM:SCP:REP 4->130|1a9xA4|4.8e-50|57.9|121/0|c.30.1.1|1/2|PreATP-grasp domain| HM:SCP:REP 128->401|1a9xA5|4e-106|48.9|274/0|d.142.1.2|1/2|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 395->549|1a9xA1|2.9e-48|42.8|152/153|a.92.1.1|1/1|Carbamoyl phosphate synthetase, large subunit connection domain| HM:SCP:REP 555->679|1a9xA4|1.8e-48|53.7|121/0|c.30.1.1|2/2|PreATP-grasp domain| HM:SCP:REP 677->937|1a9xA5|9.3e-102|52.9|261/0|d.142.1.2|2/2|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 938->1074|1a9xA2|3.1e-35|38.3|133/0|c.24.1.1|1/1|Methylglyoxal synthase-like| OP:NHOMO 1603 OP:NHOMOORG 1073 OP:PATTERN ---1-11111111111-1111111111111111222231111211111121112-1-----111--21 1111211111111111111-11111111111111111111132111111212212111111111121111211111111-1114344422221211-1111111111111---------------32222233322111221111111111111111111111121111111121222121131111122112322222221122222232333322133314331111112112222222222222211111121111232323222111142211112221111111111111111111111111111111111111111122-11111222111124221111212--2212144243312211112-11111111111111211211111111111111111111-11111111122111111111111111212131111111111111111111111111111222211----11---------1111111111111111111111111111111111111111111112211111111111111122111112111111111211212111111111111211211112212112221111111111111111111111111111211111111111111111111111111211-111111111111111111111111111-11111111111111111111111131111111111111111111111111112111111111111111122222122212311---1-11----1--111111122112133322222222222222111111111111111111111111111111111111111111111111----------1---------------------------1--11111122 12--112-311-12222332222323222223222222223222223322222232232222222222222232222-3222222222-2322324222222-443-32273322342222222432416J2-3221222212211221222122222249912321211A21522111K2121121442222263222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1073 STR:RPRED 99.9 SQ:SECSTR ccccccccEEEEEccccccTTccTHHHHHHHHHHHHHHHHTcEEEEEcccTTcGGGcGGGccEEEcccccHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHTTHHHHHTcEEccccHHHHHHHHcHHHHHHHHHHTTcccccEEEEccHHHHHHHHHHHcccEEEEETTccTTTTcEEEccHHHHHHHHHHHHHHcTTccEEEEEccTTcEEEEEEEEEcTTccEEEEEEEEEcccTTccGGGccEEEccccccHHHHHHHHHHHHHHHHHHTcccEEEEEEEEEcTTTccEEEEEEEccccHHHHHHHHHHcccHHHHHHHHHTTccGGGcccTTTTccccccccccccEEEEEEEccGGGcTTccccccccccccEEEEEEEccHHHHHHHHHHHcccccccccccccTTcTHHHHHHHTccTTHHHHHHHHHHTTccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHTGGGcHHHHHHHHHTTccHHHHHHHTTccHHHHHHHHHHTTcccEEEEccccTTccccccEEEEEEcccccTHccccccccccccEEEEEccccccTTccHHHHHHHHHHHHHHHHTTcEEEEEcccTTccTTcTTcccEEEcccccHHHHHHHHHHHccTTcccEEEccccTHHHHTTHHHHHHTTcccccccHHHHHHHHcHHHHHHHHHHHTcccccEEEcccHHHHHHHHHHHcccEEEEccEEEEccHHHHHHcHHHHHHHHHHHHHHHHHHccEEEcccTTcEEEEEEEEEccccEEEEEEEEEcccTTccGGGccEEEccccccHHHHHHHHHHHHHHHHHTTccEEEEEEEEEccccEEEEEEEccccTTHHHHHHHHcccHHHHHHHHHTTcHHHHTcccccccccEEEEEEEcGGGGcTTccccccccccccEEEEEEEccHHHHHHHHHHHTTcccccccEEEEEccGGGGTTHHHHHHHHHHTTcEEEEcHHHHHHHHTTTcccEEcccTTTccccHHHHHHHTcccEEEEccccHHHHHHHHTHHHHHHHHHTTcEEEccHHHHHHHHHHHTccTTTcTccccHHH# DISOP:02AL 1-4| PSIPRED ccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHccccccccEEEEEcccHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEccccccccccEEEccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEccccEEEEEcccccccccEEcccEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHccccHHHHHHHHHccccccccccccccccccEEEcccccEEccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEEccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHcccEEEcccHHHHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEEccccccccEEEEccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEcccEEEEEEEccccccccEEccEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccEEEEEEEccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEccHHHHHHHHHHHcccccccccEEEEEEEcccHHHHHHHHHHHHHcccEEEEEHHHHHHHHHccccEEEEEccccccHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHcccccEEEEEccc //