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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ccdA
DDBJ      :ccdA         probable holocytochrome-c synthase ccdA
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  269/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
:235 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   7->175 PF02683 * DsbD 2e-23 42.5 %
:HMM:PFM   7->214 PF02683 * DsbD 3.6e-59 45.2 208/211  
:BLT:SWISS 1->179 CCDA_BACHD 1e-29 38.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21599.1 GT:GENE ccdA GT:PRODUCT probable holocytochrome-c synthase ccdA GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 759434..760141 GB:FROM 759434 GB:TO 760141 GB:DIRECTION + GB:GENE ccdA GB:PRODUCT probable holocytochrome-c synthase ccdA GB:PROTEIN_ID AAZ21599.1 GB:DB_XREF GI:71062596 GB:GENE:GENE ccdA LENGTH 235 SQ:AASEQ MIELIIAFGAGLISFLSPCVLPLIPGYVSFITGSTLSEILEKKKIDLLPLIVFSLGFSFVFIIFGATASFLGQILLQNSQILRIIAGVIIIIFSLQLIGVLNIKFLNIEKKFYTKKSNNIFFIFIVGMAFGFGWTPCIGPILGSILALASTEETIYKAILLLSFYSLGLAIPFILSGYLMQKFLLFSKNFKKNINLVTKGGGIILLITGILILTNQLQVLGYYILNYLPFLQNFG GT:EXON 1|1-235:0| BL:SWS:NREP 1 BL:SWS:REP 1->179|CCDA_BACHD|1e-29|38.0|179/238| TM:NTM 6 TM:REGION 10->32| TM:REGION 51->73| TM:REGION 84->106| TM:REGION 124->146| TM:REGION 162->184| TM:REGION 203->225| SEG 81->92|ilriiagviiii| SEG 182->196|kfllfsknfkkninl| SEG 200->214|gggiillitgililt| RP:PFM:NREP 1 RP:PFM:REP 7->175|PF02683|2e-23|42.5|167/209|DsbD| HM:PFM:NREP 1 HM:PFM:REP 7->214|PF02683|3.6e-59|45.2|208/211|DsbD| GO:PFM:NREP 3 GO:PFM GO:0016020|"GO:membrane"|PF02683|IPR003834| GO:PFM GO:0017004|"GO:cytochrome complex assembly"|PF02683|IPR003834| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02683|IPR003834| OP:NHOMO 354 OP:NHOMOORG 278 OP:PATTERN -------------------------------------11--1---------11-------------21 -1-11---111-1111111-1-111-111111--1-11-1111--1--1111425---11--1----111---------2-1-11111---------------------------------------------------11111-------------------------1-1---1-1-1--1211-----2112222221212122211122112221211111------121------------------------------------------------11112112222222222211111111111111---------1-1-211-111111111---22231--11--1-4111--11-11111-2111-----11111112221112122211111111112--1--1-1-311-11111111111112---3121211212---------------------------------------------1-------------------------------------------------1---------------------1-----111-----------122231112---------1---------1-1111111-11--------2-----------------------------------------------------------------------------------------------------------------------------------------------1---1-11------------------------------------------------------------------------11---------------1--------------------------1----111-1--- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 33-46, 108-119| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccc //