[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ccmF
DDBJ      :ccmF         Cytochrome c-type biogenesis protein
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  412/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
:625 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   155->292 PF01578 * Cytochrom_C_asm 3e-25 46.9 %
:HMM:PFM   90->297 PF01578 * Cytochrom_C_asm 8.3e-50 36.6 194/214  
:HMM:PFM   515->544 PF09645 * F-112 0.00069 40.0 30/110  
:BLT:SWISS 49->415 CCMF_RHIME 4e-85 41.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21105.1 GT:GENE ccmF GT:PRODUCT Cytochrome c-type biogenesis protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(286249..288126) GB:FROM 286249 GB:TO 288126 GB:DIRECTION - GB:GENE ccmF GB:PRODUCT Cytochrome c-type biogenesis protein GB:PROTEIN_ID AAZ21105.1 GB:DB_XREF GI:71062102 GB:GENE:GENE ccmF LENGTH 625 SQ:AASEQ MLANQIGYYSLILGLLLSVLLCGVSIKDFNKTNKQINQNILSLSFLQLVFVIVSFLSLIVSFINSDFSNETVFNNSHTTKPLFYKISGTWGNHEGSLLLWLLVLTLFIFLFLIKSREQPKKYRILTLLFQQIIIIGFFLFVLITSNPFNYLFPIPNEGLGLNPILQDPALAIHPPILYLGYVGTSIIFSSSLAAVTQNYVTKEWGQHIKKWVLVSWIFLTIGIMLGSIWAYYELGWGGFWFWDPVENVSLMPWLTLTALLHCIVVLERRASLTSWVVILSITTFTLSMCGTFLVRSGILNSVHTFANDPARGIFILIFLFALIVLSLGIFFIFHKENNKSSNNFFWLSRETSILINNWFMMYFLAVVLIGTVYPIFLDVISSEKISVGPPFYHKLIVPFLIPFLLFMSLGPRLKWIKSKIENKNSLIITFIISVMLTFFIIKNLTADLLFYTVLISAAFFLFFTTLKELFIKKFNNISQTVSHFGFSLLILSILFNSILSSEIITNIKIGERYDYNKGEIFFKKVEERKESNFNSIIASFEIKDKNGKTIELKPEIRIYNQPIIITSEADIRTTLLEDKFLVMNLVKGNEYFNIRYQIKPFMVWIWVSVLLLSLGGLMSLFKKEI GT:EXON 1|1-625:0| BL:SWS:NREP 1 BL:SWS:REP 49->415|CCMF_RHIME|4e-85|41.8|366/676| TM:NTM 14 TM:REGION 7->29| TM:REGION 41->63| TM:REGION 96->113| TM:REGION 123->145| TM:REGION 177->199| TM:REGION 211->232| TM:REGION 246->267| TM:REGION 276->298| TM:REGION 311->333| TM:REGION 359->381| TM:REGION 391->412| TM:REGION 433->455| TM:REGION 483->505| TM:REGION 600->621| SEG 6->26|igyyslilglllsvllcgvsi| SEG 97->112|lllwllvltlfiflfl| SEG 124->144|iltllfqqiiiigfflfvlit| SEG 313->325|ifiliflfalivl| SEG 395->406|livpflipfllf| SEG 459->474|fflffttlkelfikkf| SEG 487->504|sllilsilfnsilsseii| SEG 607->620|vsvlllslgglmsl| RP:PFM:NREP 1 RP:PFM:REP 155->292|PF01578|3e-25|46.9|130/212|Cytochrom_C_asm| HM:PFM:NREP 2 HM:PFM:REP 90->297|PF01578|8.3e-50|36.6|194/214|Cytochrom_C_asm| HM:PFM:REP 515->544|PF09645|0.00069|40.0|30/110|F-112| GO:PFM:NREP 3 GO:PFM GO:0006461|"GO:protein complex assembly"|PF01578|IPR002541| GO:PFM GO:0008535|"GO:respiratory chain complex IV assembly"|PF01578|IPR002541| GO:PFM GO:0016020|"GO:membrane"|PF01578|IPR002541| OP:NHOMO 561 OP:NHOMOORG 427 OP:PATTERN 11-1-1------------1----11------1-----------------11-1--------------- 1111--11111---------------------------------------------------1----------------111---------1-------------11111-----------------------11-11111---11-------------------------------------11111----------------------------------------------------------------------------------------------------------------------------------------------------------------------1------11-1--------1--111111111111111111111111111111111-11111111111-111121111111111113111111112111111111111111111111111111111-11111111111111111111-11-2----------------------4111221111-11----1-1---21-111121111111121111-11--21111111211122111------1111-------------------------1122-121111111122111222222222222---1111------21--2-12222222222-222222222222222222111122---323333333333333312212222--111111111111---1-----1111111-1222222222212112-------1211111111111111111111---------12222111112222211222222231111111-111111------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1-11---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 624-626| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEccEEEEEEcccccccccccEEEEEEEEEEccEEEEEEEEEccEEcccccccccHHHHccccHHEEEEEcccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccc //