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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : coxC
DDBJ      :coxC         cytochrome-c oxidase
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  546/915 : Eukaryota  61/199 : Viruses  0/175   --->[See Alignment]
f.25.1
:262 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->262 1v54C PDBj 1e-83 52.0 %
:RPS:PDB   60->240 2dysC PDBj 7e-31 26.7 %
:RPS:SCOP  2->261 1m56C  f.25.1.1 * 3e-72 54.4 %
:HMM:SCOP  2->261 1m56C_ f.25.1.1 * 8.1e-99 52.9 %
:RPS:PFM   58->258 PF00510 * COX3 1e-65 66.5 %
:HMM:PFM   7->262 PF00510 * COX3 4.1e-110 54.7 256/258  
:BLT:SWISS 3->262 COX3_CARAU 4e-87 57.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20954.1 GT:GENE coxC GT:PRODUCT cytochrome-c oxidase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(138618..139406) GB:FROM 138618 GB:TO 139406 GB:DIRECTION - GB:GENE coxC GB:PRODUCT cytochrome-c oxidase GB:NOTE similar to subunit III, coxC Rickettsia GB:PROTEIN_ID AAZ20954.1 GB:DB_XREF GI:71061951 GB:GENE:GENE coxC LENGTH 262 SQ:AASEQ MSAEKKHDYHLVDPSPWPIYVSFSCLILAIGSVYYLHSEVSWGMYLGLALLLYGTYMWFRDVVIEAEHQGHHTPVVQIHHRYGMTLFIASEVMFFVAWFWAYFDASLFPSLAIGGIWPPKDIVTFDPWDIPLINTLILLLSGTTVTWSHHALLEGDRKSFIQGLVLTVILGFSFSLLQVYEYQHATFDFAGNIYGSVFYMATGFHGFHVIIGTIFLAVCLMRARKGHFTEKHHFGFEAAAWYWHFVDVVWLFLFAAIYIWGS GT:EXON 1|1-262:0| BL:SWS:NREP 1 BL:SWS:REP 3->262|COX3_CARAU|4e-87|57.7|260/261| TM:NTM 7 TM:REGION 16->38| TM:REGION 42->64| TM:REGION 81->103| TM:REGION 130->152| TM:REGION 159->179| TM:REGION 199->221| TM:REGION 241->262| SEG 43->56|gmylglalllygty| BL:PDB:NREP 1 BL:PDB:REP 7->262|1v54C|1e-83|52.0|256/259| RP:PDB:NREP 1 RP:PDB:REP 60->240|2dysC|7e-31|26.7|180/258| RP:PFM:NREP 1 RP:PFM:REP 58->258|PF00510|1e-65|66.5|200/212|COX3| HM:PFM:NREP 1 HM:PFM:REP 7->262|PF00510|4.1e-110|54.7|256/258|COX3| GO:PFM:NREP 3 GO:PFM GO:0004129|"GO:cytochrome-c oxidase activity"|PF00510|IPR000298| GO:PFM GO:0006123|"GO:mitochondrial electron transport, cytochrome c to oxygen"|PF00510|IPR000298| GO:PFM GO:0016020|"GO:membrane"|PF00510|IPR000298| RP:SCP:NREP 1 RP:SCP:REP 2->261|1m56C|3e-72|54.4|259/265|f.25.1.1| HM:SCP:REP 2->261|1m56C_|8.1e-99|52.9|259/265|f.25.1.1|1/1|Cytochrome c oxidase subunit III-like| OP:NHOMO 976 OP:NHOMOORG 629 OP:PATTERN 11----1111111111--1-1---21111111------------------------------------ 12411-1111111112111-14112111111121121111111111111111211111111111112111-------------1---------------------111-2--------------11-------------11----11322111111121212221115342111111112112--111---22211111111111111122222211112221111111113211111111111111111111--------------------------------------------------------------------------------------------------1---------------------1--122111-11114324211122133333333332-223224333311322233433334211111121111121--------1111211-112111111111111111111111-111111112-1323433332332333222544443334446551144422222212131321222121-------1133121-----11-1-111-------1--221211-----------------------------1112115122111222321222221122121--11-1------11111111111111111-1111111111111111111111111111111111111111111111-11111-1-----------111111111111112111---------------1111111---1122222222122222111----------1--3-----221113322222222111111----1111-----------------------------------------------2- -3------1--------1---------111-11111-------2-1--------131-----1-111---1-----1----------------1---11----111------11111-----1-21-1-17--11-----1--21--------1-1-------1-112--e-111111----------2-11--2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 258 STR:RPRED 98.5 SQ:SECSTR ####ccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHTTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccGGGTcccccTTcccccTTcHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHHHHHHHHHHHTTTTTc DISOP:02AL 1-5| PSIPRED ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //