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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : crtY
DDBJ      :crtY         lycopene cyclase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  17/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:343 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   52->343 1ddqC PDBj 4e-05 6.2 %
:RPS:PFM   7->329 PF05834 * Lycopene_cycl 7e-13 26.0 %
:HMM:PFM   2->331 PF05834 * Lycopene_cycl 9.4e-42 21.5 325/374  
:BLT:SWISS 130->273 LCYE_ARATH 3e-06 26.8 %
:BLT:SWISS 247->311 RPOA_ARATH 4e-04 36.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20946.1 GT:GENE crtY GT:PRODUCT lycopene cyclase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 131813..132844 GB:FROM 131813 GB:TO 132844 GB:DIRECTION + GB:GENE crtY GB:PRODUCT lycopene cyclase GB:PROTEIN_ID AAZ20946.1 GB:DB_XREF GI:71061943 GB:GENE:GENE crtY LENGTH 343 SQ:AASEQ MSLAYELDLHNKLKDATLAIIEPRLEYKRDKTWSYWKTIDHNFQDCVQKSWNNFSINIPGKTKFLECNGLPYEAIDSGLFYEKINTRLKKNKNISFYKNTNEIDLNSAFIFNSVPLLDSKEDKLWQHFKGIEIETKKNVFDDEIFNLMDFDCDQRDSVHFFYTLPYTKNKALIETTWLSKIKNDSLKDYDEQLKNYIRNHLNIRDYKVTYSEVGAIPLFHPTISNERNKMNIGTAGGMTRLSTGYTFLNIQEHSKYIRKNIHTIKESKRYEINKKYKFLDKIFLKVLNYHPEKMANIFFDMFNNSPETIIKFLSNKSTLLQDLFIILKMPKWLFIKIFFKNDK GT:EXON 1|1-343:0| BL:SWS:NREP 2 BL:SWS:REP 130->273|LCYE_ARATH|3e-06|26.8|142/524| BL:SWS:REP 247->311|RPOA_ARATH|4e-04|36.9|65/329| RP:PDB:NREP 1 RP:PDB:REP 52->343|1ddqC|4e-05|6.2|290/1112| RP:PFM:NREP 1 RP:PFM:REP 7->329|PF05834|7e-13|26.0|315/368|Lycopene_cycl| HM:PFM:NREP 1 HM:PFM:REP 2->331|PF05834|9.4e-42|21.5|325/374|Lycopene_cycl| GO:PFM:NREP 2 GO:PFM GO:0016117|"GO:carotenoid biosynthetic process"|PF05834|IPR008671| GO:PFM GO:0016705|"GO:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"|PF05834|IPR008671| OP:NHOMO 19 OP:NHOMOORG 17 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------1----------------1-----1131-----------1------------------11111------------------------------111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 290 STR:RPRED 84.5 SQ:SECSTR ###################################################TGGGGcTHHHHHHccccccTTcccGGGTTHHHHHcccccccTTccccEEccccccE#EccccccTTHHHHTTccccccEEcccccEEccccccccccccccccccccccccccTTcccccccccccccccccccccTTTTcccEEEccccTTccccEEEcccccccccEEcccccccHHHHHHHHccccccccccccccccccTTTcTTTT#TcccHHHHHHHHHHHccTTcccccccccTTTTTcccccccGGGcccccTTTGGGGTccccccccccccccccccccHHHH DISOP:02AL 341-343| PSIPRED ccHHHHHHHHccccccEEEEEccccccccccccEEEccccccHHHHHHcccccEEEEcccccccccccccccEEEcHHHHHHHHHHHHHHcccEEEEEEccEEEEEccEEEEEcccccccccccEEEEEEEEEEEcccccccccEEEEEcccccccccEEEEEEEccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHccccccHHHHHHcccc //