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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : cspL
DDBJ      :cspL         cold shock DNA-binding domain protein
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  677/915 : Eukaryota  64/199 : Viruses  1/175   --->[See Alignment]
b.40.4
:68 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->65 1mjcA PDBj 3e-17 55.6 %
:RPS:PDB   4->66 1c9oA PDBj 2e-17 51.6 %
:RPS:SCOP  4->66 1c9oA  b.40.4.5 * 7e-18 51.6 %
:HMM:SCOP  1->69 1h95A_ b.40.4.5 * 2.2e-22 49.3 %
:RPS:PFM   5->65 PF00313 * CSD 2e-14 59.0 %
:HMM:PFM   3->66 PF00313 * CSD 1.4e-29 59.4 64/67  
:BLT:SWISS 4->68 CSPA_LISMO 2e-19 62.5 %
:PROS 16->35|PS00352|COLD_SHOCK

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22078.1 GT:GENE cspL GT:PRODUCT cold shock DNA-binding domain protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1209774..1209980 GB:FROM 1209774 GB:TO 1209980 GB:DIRECTION + GB:GENE cspL GB:PRODUCT cold shock DNA-binding domain protein GB:PROTEIN_ID AAZ22078.1 GB:DB_XREF GI:71063075 GB:GENE:GENE cspL LENGTH 68 SQ:AASEQ MSLQGKVKWFNPTKGFGFIEREDKEKDVFVHVSAVRDAGMNGLDEGQALTFEVEDGPKGPSAVNLKTA GT:EXON 1|1-68:0| BL:SWS:NREP 1 BL:SWS:REP 4->68|CSPA_LISMO|2e-19|62.5|64/66| PROS 16->35|PS00352|COLD_SHOCK|PDOC00304| BL:PDB:NREP 1 BL:PDB:REP 3->65|1mjcA|3e-17|55.6|63/69| RP:PDB:NREP 1 RP:PDB:REP 4->66|1c9oA|2e-17|51.6|62/66| RP:PFM:NREP 1 RP:PFM:REP 5->65|PF00313|2e-14|59.0|61/67|CSD| HM:PFM:NREP 1 HM:PFM:REP 3->66|PF00313|1.4e-29|59.4|64/67|CSD| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00313|IPR002059| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00313|IPR002059| RP:SCP:NREP 1 RP:SCP:REP 4->66|1c9oA|7e-18|51.6|62/66|b.40.4.5| HM:SCP:REP 1->69|1h95A_|2.2e-22|49.3|69/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 2363 OP:NHOMOORG 752 OP:PATTERN ------------------------31152123----------------------------------11 553-611222211123311-142223111112333335642224322-1222354212--442-3348761-------1-11211122---------------4112322-----------------1-1-111-------------1-----------------------------------12122--2123666666666666676213333667211436233333365-33333333333332222235-113311-1-4311333211112341111111--------------1111111111111-11111111312222222222211-1444211-3-1-2-11--11241-342111112112--43451111154B55B444444533233333232-5537544549414553766887864331233576564433333333323333323------------1111111111111----22242155545666566533324467444434557586412444111--------3212323231111111224233-4526----------666334653555561551-------------------1---1114433564349B433333332332333333411-121311122245444737557755-66-568555577557755765645444445555544544455555575545555319747876576881122-----666523445222122211111--23422423334344554544434345233322222222224448444443444433323223321111115-----------------1---1----1--------1-------23-1121212--- --11------------------1--------------------------------------------------------------------------------1----1--3212121-111317A1615J3-519-1-25--32121315-14-32-1---1211-----2211-----211113143--421----- ---------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------- STR:NPRED 68 STR:RPRED 100.0 SQ:SECSTR ccEEEEEEEEETTTTEEEEEETTEEcEEEEEGGGccccccccccTTcEEEEEEEEETTEEEEEEEEEc PSIPRED ccEEEEEEEEEccccEEEEEcccccccEEEEEEEEccccccccccccEEEEEEEEcccccEEEEEEEc //