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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ctpA
DDBJ      :ctpA         tail-specific proteinase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  713/915 : Eukaryota  24/199 : Viruses  0/175   --->[See Alignment]
c.14.1
:379 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   36->353 1fcfA PDBj 3e-43 30.1 %
:RPS:PDB   58->162 2dazA PDBj 8e-17 19.2 %
:RPS:PDB   134->309 2c4wA PDBj 1e-35 19.1 %
:RPS:PDB   292->378 1aa0A PDBj 2e-15 18.4 %
:RPS:SCOP  94->353 1j7xA  c.14.1.2 * 9e-66 20.9 %
:HMM:SCOP  9->379 1fc6A4 c.14.1.2 * 1.2e-93 48.8 %
:RPS:PFM   91->158 PF00595 * PDZ 3e-09 50.0 %
:RPS:PFM   189->351 PF03572 * Peptidase_S41 1e-34 46.3 %
:HMM:PFM   189->353 PF03572 * Peptidase_S41 5e-58 51.9 162/167  
:HMM:PFM   89->158 PF00595 * PDZ 6.1e-13 27.5 69/81  
:HMM:PFM   24->63 PF06260 * DUF1024 2.8e-05 30.0 40/82  
:BLT:SWISS 29->355 CTPA_BARBK 3e-91 52.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21048.1 GT:GENE ctpA GT:PRODUCT tail-specific proteinase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 225758..226897 GB:FROM 225758 GB:TO 226897 GB:DIRECTION + GB:GENE ctpA GB:PRODUCT tail-specific proteinase GB:PROTEIN_ID AAZ21048.1 GB:DB_XREF GI:71062045 GB:GENE:GENE ctpA LENGTH 379 SQ:AASEQ MILTKRFFLFFIILLFTFQKSFSENTDLYKKIDLFGEVLEKISKEYVDEVDQSKSMDSAINGLLQSLDPYSAYMTPESFEGMQTETSGEFGGLGIEVGMEAGVVKVISPIDNTPASKAGLKAGDYIVKINNTQVQGKTLMQAVDLMRGPVGSSIEITVRRRGVKKALIFNITREVIQVQSVKSELIDNNIGYIRLTSFNENSSEQIKDKINELNKKKDLKGYILDLRNNPGGLLSQAIKISDFFLENGEIVSTRSRQASENRKWFAKKGDLTNGKTLIILINYGSASASEIVAGALKDHKRAIILGENSYGKGSVQSIIPLKNRGAIRLTIAKYYLPSGKSISEVGVTPDIEVAEGSDDFKFNSETDNQLNFAIKLFNG GT:EXON 1|1-379:0| BL:SWS:NREP 1 BL:SWS:REP 29->355|CTPA_BARBK|3e-91|52.1|326/434| TM:NTM 1 TM:REGION 6->24| SEG 7->18|fflffiillftf| BL:PDB:NREP 1 BL:PDB:REP 36->353|1fcfA|3e-43|30.1|316/387| RP:PDB:NREP 3 RP:PDB:REP 58->162|2dazA|8e-17|19.2|104/124| RP:PDB:REP 134->309|2c4wA|1e-35|19.1|162/168| RP:PDB:REP 292->378|1aa0A|2e-15|18.4|76/113| RP:PFM:NREP 2 RP:PFM:REP 91->158|PF00595|3e-09|50.0|66/82|PDZ| RP:PFM:REP 189->351|PF03572|1e-34|46.3|162/169|Peptidase_S41| HM:PFM:NREP 3 HM:PFM:REP 189->353|PF03572|5e-58|51.9|162/167|Peptidase_S41| HM:PFM:REP 89->158|PF00595|6.1e-13|27.5|69/81|PDZ| HM:PFM:REP 24->63|PF06260|2.8e-05|30.0|40/82|DUF1024| GO:PFM:NREP 3 GO:PFM GO:0005515|"GO:protein binding"|PF00595|IPR001478| GO:PFM GO:0006508|"GO:proteolysis"|PF03572|IPR005151| GO:PFM GO:0008236|"GO:serine-type peptidase activity"|PF03572|IPR005151| RP:SCP:NREP 1 RP:SCP:REP 94->353|1j7xA|9e-66|20.9|258/302|c.14.1.2| HM:SCP:REP 9->379|1fc6A4|1.2e-93|48.8|293/0|c.14.1.2|1/1|ClpP/crotonase| OP:NHOMO 1134 OP:NHOMOORG 737 OP:PATTERN -------------------------------------------------------------------- 224-------------------------------------1--------------------------111---------111111111333434341--12433333523111111111111112333443234334444411121634633322332222223335434322222222222222211111-12111111111111111112222111121211111111122111111111111111111111---11--1-111--11--1--------------------------------------------------23111111111111121221111224112112122222312111122211313111111111112221112111111111111112-11111112111-2111121222221111111111111112222222222222122------------1111111111111----1111111111112222111111111111111122111111111111111111111112111111111111111112233312121111111123212222122222621111111111111111111111111111111122111212222221222223222222--21231------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--22111111111122221111-111111111111111122222222222222222222222---------11111111111111122222222222333111144222211111111-1--------------------------1111111111131 ------------------------------------------------------------------------------------------------------------4---1--------------------------------------------------1---------1-4551E222355214-44351---3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 344 STR:RPRED 90.8 SQ:SECSTR ###################################GccHHHHHHHHHHHHHTTcTTccccccGGGcHHHHHHccccccccTTcccccccccccEEEEccccccEEEEEEEcTTccEEEEEEEEcccccGGGcTcccccccEEEEEEEcTTGGGcTTTccGHHccEEGGTcccHHHHHHHHHHHHccHHTTccEEEEEEEcccHHHHHHHHHHHHHcccccEEEccHHEEcGGGGGTcHHHHHHHHTccccEEEEEccGcGGGccGGGTccHHHHHccEEEEccTTHHHHHHHHHHHHHHHHHHTTTTccccccccEEEEcccccccEEEEcEEEEcTTccccTTTcccccEEccccHHHHHTTTccHHHHHHHHHHHHH PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccEEEEEEEEEEEccEEEEEEEEcccHHHHcccccccEEEEEccEEcccccHHHHHHHHccccccEEEEEEEEccccEEEEEEEEEEEEEccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHcccccEEEEEccccccEEEEEcccccccccccEEEEEccccccHHHHHHHHHHHcccEEEEEccccccEEEEEEEEcccccEEEEEEEEEEcccccEEcccccccEEEcccccHHHHHccccHHHHHHHHHHHcc //