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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : cycA
DDBJ      :cycA         cytochrome c'
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  4/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.24.3
:147 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->146 1a7vA PDBj 4e-11 30.5 %
:RPS:PDB   27->146 1a7vA PDBj 1e-14 31.1 %
:RPS:SCOP  27->146 1a7vA  a.24.3.2 * 1e-15 32.2 %
:HMM:SCOP  22->144 1jafA_ a.24.3.2 * 1.9e-24 30.3 %
:RPS:PFM   76->144 PF01322 * Cytochrom_C_2 2e-07 45.5 %
:HMM:PFM   27->144 PF01322 * Cytochrom_C_2 6.7e-25 33.3 117/122  
:BLT:SWISS 28->146 CYCP_RHOPA 1e-10 30.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22028.1 GT:GENE cycA GT:PRODUCT cytochrome c' GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1169497..1169940) GB:FROM 1169497 GB:TO 1169940 GB:DIRECTION - GB:GENE cycA GB:PRODUCT cytochrome c' GB:PROTEIN_ID AAZ22028.1 GB:DB_XREF GI:71063025 GB:GENE:GENE cycA LENGTH 147 SQ:AASEQ MTLIKNTLFFIFILFYSFSAFSEQTVEEIIKERKSIFSKNYKTAKRVQGLASNGSLDEAKKLMIEMSDNYKRLIDLFPENSKVGFKTEALPSIWENKDEFNLLMTKASSNMIELTSVIDGAEDMKATLGKYMWSSCKACHSKFRAEH GT:EXON 1|1-147:0| BL:SWS:NREP 1 BL:SWS:REP 28->146|CYCP_RHOPA|1e-10|30.5|118/146| TM:NTM 1 TM:REGION 1->23| SEG 8->22|lffifilfysfsafs| BL:PDB:NREP 1 BL:PDB:REP 28->146|1a7vA|4e-11|30.5|118/125| RP:PDB:NREP 1 RP:PDB:REP 27->146|1a7vA|1e-14|31.1|119/125| RP:PFM:NREP 1 RP:PFM:REP 76->144|PF01322|2e-07|45.5|66/121|Cytochrom_C_2| HM:PFM:NREP 1 HM:PFM:REP 27->144|PF01322|6.7e-25|33.3|117/122|Cytochrom_C_2| GO:PFM:NREP 4 GO:PFM GO:0005506|"GO:iron ion binding"|PF01322|IPR012127| GO:PFM GO:0009055|"GO:electron carrier activity"|PF01322|IPR012127| GO:PFM GO:0020037|"GO:heme binding"|PF01322|IPR012127| GO:PFM GO:0042597|"GO:periplasmic space"|PF01322|IPR012127| RP:SCP:NREP 1 RP:SCP:REP 27->146|1a7vA|1e-15|32.2|118/125|a.24.3.2| HM:SCP:REP 22->144|1jafA_|1.9e-24|30.3|122/0|a.24.3.2|1/1|Cytochromes| OP:NHOMO 4 OP:NHOMOORG 4 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------1--------------1---------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 120 STR:RPRED 81.6 SQ:SECSTR ##########################ccHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHGGGGccGGGcccccccccTHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccc# DISOP:02AL 79-86, 146-147| PSIPRED ccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //