[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : cycM
DDBJ      :cycM         cytochrome C
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  161/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
a.3.1
:179 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   71->168 1c7mA PDBj 1e-22 47.9 %
:RPS:PDB   72->172 155cA PDBj 6e-30 36.7 %
:RPS:SCOP  72->170 1c2rA  a.3.1.1 * 9e-17 33.3 %
:HMM:SCOP  70->175 1cxcA_ a.3.1.1 * 1.4e-27 45.7 %
:HMM:PFM   77->170 PF00034 * Cytochrom_C 7.3e-09 23.1 65/91  
:HMM:PFM   9->47 PF07790 * DUF1628 4.2e-05 33.3 39/80  
:BLT:SWISS 1->168 CYCM_RICTY 9e-33 41.9 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21326.1 GT:GENE cycM GT:PRODUCT cytochrome C GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(491305..491844) GB:FROM 491305 GB:TO 491844 GB:DIRECTION - GB:GENE cycM GB:PRODUCT cytochrome C GB:PROTEIN_ID AAZ21326.1 GB:DB_XREF GI:71062323 GB:GENE:GENE cycM LENGTH 179 SQ:AASEQ MDSFELNKIIAAILMVALLVIGLGKVADGVFHVNKPENPGYQVEVEGQPASTVSQVAEVEQKVDIAAIMALGDVTLGEKIFKKCAACHSIEKGGPNKIGPALYNVVGSKVGAVEDYKYSKTLASYGKDWTFEELNGFLTKPSSYLKGTKMSYAGLRKEADRASIIKYLNQNSDSPKQLP GT:EXON 1|1-179:0| BL:SWS:NREP 1 BL:SWS:REP 1->168|CYCM_RICTY|9e-33|41.9|167/175| TM:NTM 1 TM:REGION 5->27| BL:PDB:NREP 1 BL:PDB:REP 71->168|1c7mA|1e-22|47.9|96/100| RP:PDB:NREP 1 RP:PDB:REP 72->172|155cA|6e-30|36.7|98/134| HM:PFM:NREP 2 HM:PFM:REP 77->170|PF00034|7.3e-09|23.1|65/91|Cytochrom_C| HM:PFM:REP 9->47|PF07790|4.2e-05|33.3|39/80|DUF1628| RP:SCP:NREP 1 RP:SCP:REP 72->170|1c2rA|9e-17|33.3|99/116|a.3.1.1| HM:SCP:REP 70->175|1cxcA_|1.4e-27|45.7|105/0|a.3.1.1|1/1|Cytochrome c| OP:NHOMO 628 OP:NHOMOORG 347 OP:PATTERN -------------------------------------------------------------------- --1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------433311111325455342221122222222222111413325332-23312233225455522714222261711111111311-22311111111111111111111111111111111543--1111-----------------------11111--1-----11--111121-----------------1-2-----------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------1--------------------------------------1-------111--1---111--------------------1---111-1--111------1-------------------------------------------------------- 11--112-521-1111111111111111111111-11111111111111111111111111111111111121112222211111111-12111111111111112-19162232111112--1461927F1-54212321215321-222141-2122213111112136222111-1D1111142351231121213 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 156 STR:RPRED 87.2 SQ:SECSTR #######################TTccccccHHHHHHHHHHHHHTccccccHHHHTTEEEcccccEEEccccccHHHHHHHTTTTTTEEcccccccccEEEccccTTccTTccccccccHHHHHHccccccHHHHHHHHccTTTTTccccccccccccccHHHHHHHHHHHccTccccc DISOP:02AL 1-2, 173-179| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHcHHHHcccccccccccccHHHHHHHHHHHHHHcccccccc //