[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : dapA
DDBJ      :dapA         dihydrodipicolinate synthase
Swiss-Prot:DAPA_PELUB   RecName: Full=Dihydrodipicolinate synthase;         Short=DHDPS;         EC=4.2.1.52;

Homologs  Archaea  61/68 : Bacteria  854/915 : Eukaryota  143/199 : Viruses  0/175   --->[See Alignment]
c.1.10
:293 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->293 2vc6A PDBj 6e-79 51.2 %
:RPS:PDB   1->293 3cprA PDBj 6e-87 33.8 %
:RPS:SCOP  2->292 1f5zA  c.1.10.1 * 8e-87 23.7 %
:HMM:SCOP  1->293 1f74A_ c.1.10.1 * 1.2e-94 48.4 %
:RPS:PFM   3->288 PF00701 * DHDPS 4e-69 47.7 %
:HMM:PFM   1->287 PF00701 * DHDPS 7.1e-98 49.3 284/289  
:BLT:SWISS 1->293 DAPA_PELUB e-168 100.0 %
:PROS 37->54|PS00665|DHDPS_1
:PROS 132->162|PS00666|DHDPS_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21867.1 GT:GENE dapA GT:PRODUCT dihydrodipicolinate synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1028616..1029497) GB:FROM 1028616 GB:TO 1029497 GB:DIRECTION - GB:GENE dapA GB:PRODUCT dihydrodipicolinate synthase GB:PROTEIN_ID AAZ21867.1 GB:DB_XREF GI:71062864 GB:GENE:GENE dapA LENGTH 293 SQ:AASEQ MFKGSNVALITPFKNNELDVEAYIKLIHFQISNGTNGLVPAGTTGESPTLSHDEHQKVIDLCVKESNGKNIVIAGTGSNSTKEAISLTTHAEKAGADAALIVTPYYNKPTQEGLYQHYKAINDKCGIPIIIYNIPGRSVIDMSVDTMARLFELKNIVGVKDATGDLDRVNQQKDKMGTDFVQLTGNDDNALEFNNRGGVGSISVTANIAPKLCSDFQKASKIENNESKLEAIRLDKILQPIHSSMFIESNPSPVKYAAKLLGLCDDEVRLPLVKVTDPTKDIVKEALVSANLL GT:EXON 1|1-293:0| SW:ID DAPA_PELUB SW:DE RecName: Full=Dihydrodipicolinate synthase; Short=DHDPS; EC=4.2.1.52; SW:GN Name=dapA; OrderedLocusNames=SAR11_1062; SW:KW Amino-acid biosynthesis; Complete proteome; Cytoplasm;Diaminopimelate biosynthesis; Lyase; Lysine biosynthesis; Schiff base. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->293|DAPA_PELUB|e-168|100.0|293/293| GO:SWS:NREP 5 GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0019877|"GO:diaminopimelate biosynthetic process"|Diaminopimelate biosynthesis| GO:SWS GO:0016829|"GO:lyase activity"|Lyase| GO:SWS GO:0009085|"GO:lysine biosynthetic process"|Lysine biosynthesis| PROS 37->54|PS00665|DHDPS_1|PDOC00569| PROS 132->162|PS00666|DHDPS_2|PDOC00569| BL:PDB:NREP 1 BL:PDB:REP 1->293|2vc6A|6e-79|51.2|289/291| RP:PDB:NREP 1 RP:PDB:REP 1->293|3cprA|6e-87|33.8|287/301| RP:PFM:NREP 1 RP:PFM:REP 3->288|PF00701|4e-69|47.7|283/288|DHDPS| HM:PFM:NREP 1 HM:PFM:REP 1->287|PF00701|7.1e-98|49.3|284/289|DHDPS| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00701|IPR002220| GO:PFM GO:0016829|"GO:lyase activity"|PF00701|IPR002220| RP:SCP:NREP 1 RP:SCP:REP 2->292|1f5zA|8e-87|23.7|287/293|c.1.10.1| HM:SCP:REP 1->293|1f74A_|1.2e-94|48.4|289/0|c.1.10.1|1/1|Aldolase| OP:NHOMO 2128 OP:NHOMOORG 1058 OP:PATTERN 111---113333333121111111211122211111111111111111111111111-1122222--- 3251423133312123311-1411221111124343349711111411133-131114--112221676321111211322121111134221111111111112213251111111111----111111111111111111111111111111111111111111111111111111111113--111112122222222222222227244322221332411111111241222222222222222112211--11-1-1-3311121211111111111111211333333332331111111111111211111111212124111111121235111222111--1131122111111222112111213111111111119451234433122222222224-21311C114511B7748A6CB966532121434133133111111111121121311-111111111111111111111111111111124431467756573332446544443573722451255421322325367121121221111111111111111111111211111211111111111113111111212211211111111111111111222211211312111111211112111122--1111111111132522314224443422-22422332222542232221334323232323233333232233222222211222222222222111111111121111325222222222222222553542212121443544352454214331----1---111111111112111112323322211111112111111----------1--------1--------1---1---1111112111111 ---------------2255444466563311113331111111222355599DA89622222115-------533--------------443222132311-1312--2-31-111311-111-1213-562-223211-2-221-111-2--1111122211331---11--211111J1111232145311241123 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 293 STR:RPRED 100.0 SQ:SECSTR HHccEEEEccccccTTcccHHHHHHHHHHHHHTTccEEEEccTTTTTTTccHHHHHHHHHHHHHHHTTTcEEEEEcccccHHHHHHHHHHHHHTTccEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEcHHHHcccccHHHHHHHTTcTTEEEEEEccccHHHHHHHHHHHHHccEEEEccGGGHHHHHHTTccEEEEcGGGTcHHHHHHHHHHHHHTcHHTTcHHHHHHHHTHHHHHHHHHHcHHHHHHHHHHHTTcccccccTTcccccHHHHHHHHHHHHHTTcc PSIPRED cccccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccHHHccHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHccccEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHHcccEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccc //