[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : dapD
DDBJ      :dapD         2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
Swiss-Prot:DAPD_PELUB   RecName: Full=2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase;         EC=2.3.1.117;AltName: Full=Tetrahydrodipicolinate N-succinyltransferase;         Short=THP succinyltransferase;         Short=Tetrahydropicolinate succinylase;         Short=THDP succinyltransferase;

Homologs  Archaea  7/68 : Bacteria  543/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
b.81.1
:275 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->275 3eg4A PDBj 2e-88 58.5 %
:RPS:PDB   1->275 3bxyA PDBj 7e-44 56.7 %
:RPS:SCOP  1->274 1kgqA  b.81.1.2 * e-106 56.3 %
:HMM:SCOP  1->259 1tdtA_ b.81.1.2 * 4.5e-70 32.5 %
:HMM:PFM   152->168 PF00132 * Hexapep 0.00029 41.2 17/18  
:BLT:SWISS 1->275 DAPD_PELUB e-152 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21285.1 GT:GENE dapD GT:PRODUCT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(456712..457539) GB:FROM 456712 GB:TO 457539 GB:DIRECTION - GB:GENE dapD GB:PRODUCT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase GB:PROTEIN_ID AAZ21285.1 GB:DB_XREF GI:71062282 GB:GENE:GENE dapD LENGTH 275 SQ:AASEQ MKEFESIINTAWENKDSINGQSDKSILDAINQTIELVDKGELRVAEKNGNEWVVNQWVKKAIMLSFRTHDMDSLSGPYSSWYDKSHLLKGKTANWTKEDHIKAGFRMVPNSPVRKGSFIGKNAVLMPCFVNIGAYVDEGTMVDTWASVGSCAQIGKNCHISGGAGIGGVLEPMQANPTIIEDNCFIGARSEIVEGVIVGEGSVLSMGVFIGQSTKIVYRETGEVIYGKIPPYSVIVPGSIPSKDGKGPALYCAVIIKQVDEKTRSKTSINDLLRD GT:EXON 1|1-275:0| SW:ID DAPD_PELUB SW:DE RecName: Full=2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; EC=2.3.1.117;AltName: Full=Tetrahydrodipicolinate N-succinyltransferase; Short=THP succinyltransferase; Short=Tetrahydropicolinate succinylase; Short=THDP succinyltransferase; SW:GN Name=dapD; OrderedLocusNames=SAR11_0463; SW:KW Acyltransferase; Amino-acid biosynthesis; Complete proteome;Cytoplasm; Diaminopimelate biosynthesis; Lysine biosynthesis; Repeat;Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->275|DAPD_PELUB|e-152|100.0|275/275| GO:SWS:NREP 6 GO:SWS GO:0008415|"GO:acyltransferase activity"|Acyltransferase| GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0019877|"GO:diaminopimelate biosynthetic process"|Diaminopimelate biosynthesis| GO:SWS GO:0009085|"GO:lysine biosynthetic process"|Lysine biosynthesis| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| SEG 190->203|seivegvivgegsv| BL:PDB:NREP 1 BL:PDB:REP 1->275|3eg4A|2e-88|58.5|272/279| RP:PDB:NREP 1 RP:PDB:REP 1->275|3bxyA|7e-44|56.7|268/275| HM:PFM:NREP 1 HM:PFM:REP 152->168|PF00132|0.00029|41.2|17/18|Hexapep| RP:SCP:NREP 1 RP:SCP:REP 1->274|1kgqA|e-106|56.3|270/274|b.81.1.2| HM:SCP:REP 1->259|1tdtA_|4.5e-70|32.5|255/0|b.81.1.2|1/1|Trimeric LpxA-like enzymes| OP:NHOMO 555 OP:NHOMOORG 552 OP:PATTERN ------------------------1--11111---------------------1-------------- 11111-----------------------------------1111--------------------------1-------1--11--111--------11111111111111---------------11111111111-------------------------------------------------------111111111111111111111111111111-11-111111111111111111111111111111-----1-1-1111---1-111----------1--11111111111-------------1-11111111-1--11111111111-1111111----------------------1---11--111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111-11111--1111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-----------------------111111-----------------------1---111111--21-2-1111111111111111111--1111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111----1111-11111-11111111111111-------------------1----1---1--------------111111111111111121------------------------------------------1111111111--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 275 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHHHHHHTGGGccTTTcHHHHHHHHHHHHHHHHTccccEEEETTEEEEcHHHHHHHHHHHHHcccEEEEccccEEEEcccccccTTTTccHHHHHHHccEEcTTcEEcTTcEEcTTcEEccEEEcTTcEEcTTcEEcTTEEEcTTcEEcTTcEEcTTcEEccccccTTccccEEcTTcEEcTTcEEcTTcEEcTTcEEcTTcEEcTTccEEETTTccEEccEEcTTEEEEEEEEEcccccccEEEEEEEEEEccGGGcHHccHHHHHHc DISOP:02AL 1-2| PSIPRED cHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccEEEEEEEccccEEEcHHHHEEEEEEcccccEEEEEcccccccccccccccccccccHHHHHHccEEEccccEEccccEEccccEEEccEEccccEEccccEEcccEEEcccEEEccccEEccccEEEEcccccccccEEEccccEEccccEEEccEEEccccEEEccEEEcccEEEEEEcccEEEEEEcccccEEEEccccccccccccccccEEEEEHHHccHHHHHHHHHHcc //