[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : dapE
DDBJ      :dapE         succinyl-diaminopimelate desuccinylase
Swiss-Prot:DAPE_PELUB   RecName: Full=Succinyl-diaminopimelate desuccinylase;         Short=SDAP desuccinylase;         EC=3.5.1.18;AltName: Full=N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase;

Homologs  Archaea  38/68 : Bacteria  532/915 : Eukaryota  25/199 : Viruses  0/175   --->[See Alignment]
c.56.5d.58.19
:384 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->380 1vgyA PDBj 4e-69 40.7 %
:RPS:PDB   7->383 3dljA PDBj 8e-46 15.1 %
:RPS:SCOP  7->263 1vgyA1  c.56.5.4 * 8e-52 36.0 %
:RPS:SCOP  234->277 1ysjA2  d.58.19.1 * 1e-04 23.3 %
:RPS:SCOP  304->384 1vgyA1  c.56.5.4 * 3e-20 39.0 %
:HMM:SCOP  2->384 1vgyA1 c.56.5.4 * 1.3e-57 29.8 %
:RPS:PFM   69->380 PF01546 * Peptidase_M20 4e-15 26.4 %
:HMM:PFM   69->382 PF01546 * Peptidase_M20 3.4e-35 32.3 164/171  
:BLT:SWISS 1->384 DAPE_PELUB 0.0 100.0 %
:PROS 104->142|PS00759|ARGE_DAPE_CPG2_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21284.1 GT:GENE dapE GT:PRODUCT succinyl-diaminopimelate desuccinylase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(455557..456711) GB:FROM 455557 GB:TO 456711 GB:DIRECTION - GB:GENE dapE GB:PRODUCT succinyl-diaminopimelate desuccinylase GB:PROTEIN_ID AAZ21284.1 GB:DB_XREF GI:71062281 GB:GENE:GENE dapE LENGTH 384 SQ:AASEQ MPTYNEITLAKELIRFPSITPIDAGVMKFLAKKLTTIGFKCKILEFKDKNSKPVKNLYARLGNTQPNFMFAGHLDVVPPGNIQDWTIKPFSPTIKKNHLIGRGANDMKSAIASWVVAVNNYVLTNKKINGSISLLITGDEEGVAINGTKKVVDYLKKKKEKIDFCLVGEPTNPNKLGEMIKIGRRGSINAELTIIGTQGHVAYPHRAKNPSTSLIKILNEIKEIKFDKGTKDFQPTNLEVTKININNTADNVIPGLARATFNIRFNNKHTSSSLKNRLNKIFKKITKKDKSNFKVEYRVSGEAFLTKPNKTTYMIQDVIKKITKIKPQLSTTGGTSDARFIRKIAPCLEFGLVGKTMHKVDEAVSISDLKKLTKIYSEILKNYF GT:EXON 1|1-384:0| SW:ID DAPE_PELUB SW:DE RecName: Full=Succinyl-diaminopimelate desuccinylase; Short=SDAP desuccinylase; EC=3.5.1.18;AltName: Full=N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; SW:GN Name=dapE; OrderedLocusNames=SAR11_0462; SW:KW Amino-acid biosynthesis; Cobalt; Complete proteome;Diaminopimelate biosynthesis; Hydrolase; Lysine biosynthesis;Metal-binding; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->384|DAPE_PELUB|0.0|100.0|384/384| GO:SWS:NREP 5 GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0019877|"GO:diaminopimelate biosynthetic process"|Diaminopimelate biosynthesis| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0009085|"GO:lysine biosynthetic process"|Lysine biosynthesis| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| PROS 104->142|PS00759|ARGE_DAPE_CPG2_2|PDOC00613| SEG 149->161|kkvvdylkkkkek| SEG 214->225|likilneikeik| SEG 279->294|nkifkkitkkdksnfk| BL:PDB:NREP 1 BL:PDB:REP 7->380|1vgyA|4e-69|40.7|361/370| RP:PDB:NREP 1 RP:PDB:REP 7->383|3dljA|8e-46|15.1|377/471| RP:PFM:NREP 1 RP:PFM:REP 69->380|PF01546|4e-15|26.4|292/308|Peptidase_M20| HM:PFM:NREP 1 HM:PFM:REP 69->382|PF01546|3.4e-35|32.3|164/171|Peptidase_M20| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF01546|IPR002933| GO:PFM GO:0016787|"GO:hydrolase activity"|PF01546|IPR002933| RP:SCP:NREP 3 RP:SCP:REP 7->263|1vgyA1|8e-52|36.0|250/262|c.56.5.4| RP:SCP:REP 234->277|1ysjA2|1e-04|23.3|43/96|d.58.19.1| RP:SCP:REP 304->384|1vgyA1|3e-20|39.0|81/262|c.56.5.4| HM:SCP:REP 2->384|1vgyA1|1.3e-57|29.8|262/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 734 OP:NHOMOORG 595 OP:PATTERN --2212-211111112-211111------------1111-11----111----11-22212---11-1 -1-------------------1---1-------111-2----------------1----111--11-112------------21-------1-------1-1-1-111-1---------------------------11-2----1--------------------------------------------1------------------2-11-------12-1-1111111--11111-11111111322221-3-22-3---112232121-----1-------------------------------------------1----------------3------1----------------2------1--1--111111111112221113222111111111112-11111212121133321121111111--12233233321222222221111111111-11111--11111111111111111-121111112211211122111112222111111212111111221112112141111111111111111111111111--1----11---------------------1-111111111111111111111111111221211211221111111111113111111-1-211111111111112111111111111-1111111111111111111131221111111111111111111211111111111111111111111121111122321111311121211111211111111112111111112223121221212---------11111111111111111111111111111111---------------1----------1--------1--------11111-11111- -------------111-1--1-----1------111-------------1-111--------11---1--1--1----1-1---------2---------------------------11---------------------------------2----------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 383 STR:RPRED 99.7 SQ:SECSTR #HHHHHHHHHHHHHTcccccccccHHHHHHHHHHHHTTcEEEEEccEEEcccEEEcEEEEEcTTccEEEEEEEcccccccGGGTccccTTccEEETTEEEcTTTTTTHHHHHHHHHHHHHHHHTTcccccEEEEEEEccGGGTTTTHHHHHHHHTTTTcTTccEEEEcccccccccEEEEEEcEEEEEEEEEEcccccEETTcTTccccHHHHHHHHHTTcccTTcccccTTTTTTcccccHcccccccccEEccEEEEEEEEEEcTTccHHHHHHHHHHHHHHHHHTTccccEEEEEEEEEEccEEccTTcHHHHHHHHHHHccccEEEEEccccHHHHHHHHcEEcccccTTccTTcTTcEEEHHHHHHHHHHHHHHHHHHH DISOP:02AL 1-2| PSIPRED cccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEEEcccccEEEEEcccccccccccccccccccccEEccccEEEccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEcccccccccccEEEEEEcEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEcccEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHccEEEEEcccccccccccEEEHHHHHHHHHHHHHHHHHcc //