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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : etfA
DDBJ      :etfA         electron transfer flavoprotein alpha-subunit
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  544/915 : Eukaryota  180/199 : Viruses  0/175   --->[See Alignment]
c.26.2c.31.1
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->311 2a1uA PDBj 4e-79 46.8 %
:RPS:PDB   2->309 1efpA PDBj 1e-55 50.5 %
:RPS:SCOP  1->204 1efpB  c.26.2.3 * 1e-32 17.7 %
:RPS:SCOP  186->309 1efpA2  c.31.1.2 * 4e-53 67.7 %
:HMM:SCOP  2->186 1efvA1 c.26.2.3 * 3.4e-55 37.8 %
:HMM:SCOP  188->309 1o97D2 c.31.1.2 * 3.3e-48 61.5 %
:RPS:PFM   3->153 PF01012 * ETF 9e-12 32.2 %
:RPS:PFM   188->273 PF00766 * ETF_alpha 5e-31 67.4 %
:HMM:PFM   189->273 PF00766 * ETF_alpha 3.4e-40 65.9 85/86  
:HMM:PFM   3->154 PF01012 * ETF 1.5e-36 33.1 151/164  
:BLT:SWISS 2->309 ETFA_CAEEL 3e-88 53.1 %
:PROS 253->279|PS00696|ETF_ALPHA

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22055.1 GT:GENE etfA GT:PRODUCT electron transfer flavoprotein alpha-subunit GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1191819..1192772) GB:FROM 1191819 GB:TO 1192772 GB:DIRECTION - GB:GENE etfA GB:PRODUCT electron transfer flavoprotein alpha-subunit GB:PROTEIN_ID AAZ22055.1 GB:DB_XREF GI:71063052 GB:GENE:GENE etfA LENGTH 317 SQ:AASEQ MSILLIVEHNNKELRPFTLNAITAASQIDGDVHALLIGNNCSDVAKVLSEIPLVKKVIQVEATHYENFLPENFAPLIVKVSENYSHVISSANTFGKNLMPRIAALMDTSQVSDIIKVVSPDTFIRPIYAGNAFATVKSTDAKKCVTIRPTSFEPCETSGGSAPIEKMDSVKEFTLSKFIKREEVKSDRPELGTARIVISGGRGMQNGDNFKLITDIADKLNAAIGASRAAVDAGYISNEHQVGQTGKVVVPDLYIAVGISGAIQHLAGMKESKIIVAINKDGEAPIFSVADYGLEADLFEALPQFLEELNKLNTIQK GT:EXON 1|1-317:0| BL:SWS:NREP 1 BL:SWS:REP 2->309|ETFA_CAEEL|3e-88|53.1|307/332| PROS 253->279|PS00696|ETF_ALPHA|PDOC00583| BL:PDB:NREP 1 BL:PDB:REP 2->311|2a1uA|4e-79|46.8|310/315| RP:PDB:NREP 1 RP:PDB:REP 2->309|1efpA|1e-55|50.5|307/307| RP:PFM:NREP 2 RP:PFM:REP 3->153|PF01012|9e-12|32.2|146/157|ETF| RP:PFM:REP 188->273|PF00766|5e-31|67.4|86/86|ETF_alpha| HM:PFM:NREP 2 HM:PFM:REP 189->273|PF00766|3.4e-40|65.9|85/86|ETF_alpha| HM:PFM:REP 3->154|PF01012|1.5e-36|33.1|151/164|ETF| RP:SCP:NREP 2 RP:SCP:REP 1->204|1efpB|1e-32|17.7|198/246|c.26.2.3| RP:SCP:REP 186->309|1efpA2|4e-53|67.7|124/124|c.31.1.2| HM:SCP:REP 2->186|1efvA1|3.4e-55|37.8|185/188|c.26.2.3|1/1|Adenine nucleotide alpha hydrolases-like| HM:SCP:REP 188->309|1o97D2|3.3e-48|61.5|122/0|c.31.1.2|1/1|DHS-like NAD/FAD-binding domain| OP:NHOMO 1227 OP:NHOMOORG 754 OP:PATTERN 22----2222222222-22322212112-111-----------------------------3322--- 1232211111111111111-11111111111111111121111111-11---111112--11211111121--------152------11111122---111111111-1---------------1111111112111122---12-------11-----------1----------------11111--112111111-1111111111111111111131111------21----------------------1--------11---------------------------------------------------------1532555555554541433422215-3-1-12-973463-141--11-3-12-11111111132222111222221111111111112222242212113112334335233411111111111112222222222212322-----------------------------1121113321222233422222223722221245612121112261222231213111-112111111111---14115422----------7471915--11211114-------------------------1111-1112121-1111111311112132121-----1-------2-1-1--3332333332-2333333333233333331-------13231333332313113-2212222-----------------1111111111-1124---------------11111111114122222222222221223-------------1-----11-1111111111111111--12111111----------1-------------------------11111121111-- ----111-211-111111111111111111111111111111111111111111111-1111111111--1111111111111111-1-12111111111111112-1212121112111111111121251-1221111111111111111-2122111211211121141111111-----1111321111121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 311 STR:RPRED 98.1 SQ:SECSTR TcEEEEcccccccccHHHHHHHHHHHGGGccEEEEEEETTcHHHHHHHHTcTTEEEEEEEEcGGGTTccHHHHHHHHHHHHTTccEEEEEccHHHHHHHHHHHHHTTccEEEEEcEEccccEEEEEEGGGTEEEEEEcccccEEEEEcGGGcccccccccccccccccccccccccccccccccccccccTTTccEEEEEcGGGccccTTHHHHHHHHHHTcEEEEcHHHHHTTcccGGGccccccccccccEEEEEcccccHHHHTTTTTccEEEEEEccTTcGGGGTccEEEEccHHHHHHHHHHTcTc###### DISOP:02AL 153-167, 314-317| PSIPRED cEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHccccEEEEEEccHHHcccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHccccccEEEEEEEccEEEEEEEccEEEEEEEEccccEEEEEccccccccccccccEEEEEEccccccccEEEEEEEEccccccccccccEEEEEccccccHHHHHHHHHHHHHHccEEEccHHHHHcccccHHHEEccccEEEccEEEEEEEEccHHHHHHHHccccEEEEEEccccccHHHHccEEEEHHHHHHHHHHHHHHHHHHHHcc //