[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : etfB
DDBJ      :etfB         electron transfer flavoprotein beta-chain
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  538/915 : Eukaryota  170/199 : Viruses  0/175   --->[See Alignment]
c.26.2
:249 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->242 1efpB PDBj 6e-77 59.9 %
:RPS:PDB   1->248 2a1uB PDBj 6e-67 58.1 %
:RPS:SCOP  1->242 1efpB  c.26.2.3 * 2e-62 62.4 %
:HMM:SCOP  1->242 1efpB_ c.26.2.3 * 1.1e-97 49.0 %
:RPS:PFM   32->175 PF01012 * ETF 4e-18 46.0 %
:HMM:PFM   27->183 PF01012 * ETF 3.8e-42 34.0 153/164  
:BLT:SWISS 1->249 ETFB_BRAJA 3e-91 63.9 %
:PROS 155->175|PS01065|ETF_BETA

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22056.1 GT:GENE etfB GT:PRODUCT electron transfer flavoprotein beta-chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1192772..1193521) GB:FROM 1192772 GB:TO 1193521 GB:DIRECTION - GB:GENE etfB GB:PRODUCT electron transfer flavoprotein beta-chain GB:PROTEIN_ID AAZ22056.1 GB:DB_XREF GI:71063053 GB:GENE:GENE etfB LENGTH 249 SQ:AASEQ MKILVAVKRVIDYNVQIRVKEDGTGIVTDNVKMSTNPPDDNAIEEAVKIKEAGKATEIVAVTIGEEKAQETVRKALAVGADRGIHVKVDGVVEPLAVAKILQKIVDKEKPDLVFMGKQAIDDDCNQTGQMLSALLNWPQATFASKIDIKDNKLEIIREIDEGLETIKVNVPAVVTCDLRLNEPRYASLPNIMKAKKKPIDQMTAADLGVDATPRVQQIKVEEPPKRKAGIKVSSVAELVQKLKNEAKVI GT:EXON 1|1-249:0| BL:SWS:NREP 1 BL:SWS:REP 1->249|ETFB_BRAJA|3e-91|63.9|249/249| PROS 155->175|PS01065|ETF_BETA|PDOC00816| BL:PDB:NREP 1 BL:PDB:REP 1->242|1efpB|6e-77|59.9|242/246| RP:PDB:NREP 1 RP:PDB:REP 1->248|2a1uB|6e-67|58.1|248/252| RP:PFM:NREP 1 RP:PFM:REP 32->175|PF01012|4e-18|46.0|139/157|ETF| HM:PFM:NREP 1 HM:PFM:REP 27->183|PF01012|3.8e-42|34.0|153/164|ETF| RP:SCP:NREP 1 RP:SCP:REP 1->242|1efpB|2e-62|62.4|242/246|c.26.2.3| HM:SCP:REP 1->242|1efpB_|1.1e-97|49.0|239/246|c.26.2.3|1/1|Adenine nucleotide alpha hydrolases-like| OP:NHOMO 1089 OP:NHOMOORG 738 OP:PATTERN 22----2222222222-11321211111-111-----------------------------3322--- 1232111111111111111-11111111111111111122111111-11---111112--112-1111121---------11------11111122---111111111-1---------------1111111112111122---12-------11-----------1----------------11111--11211111111111111111111111111131111------21----------------------1-------------------------------------------------------------------1532444444443431422422214-1-1-12-773463-141--11-2-12-111111111322221112222211111111111-1121131112113112334335232311111111111112222222212211322-----------------------------1121112311211122111111113611111134511121112161222231212111-112111111111---14114421----------7471926--11211114-------------------------1111-1111121-1111111311112132121-----1-------1---1--2222222221-2222222222222222221-------13221333332313113--112221-----------------1111111111-1113---------------11111111114111111111111111112-------------1-----11-1111111111111111--11111111----------1-------------------------11111121111-- ----111-211-111-11111111111111111111111111111111111111-1111111111111-11111111111111111-1-12111111111111112-1312111121-1--11111131282-112-11-11111-11111--1--1111111111121121121111-----111113-111121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 248 STR:RPRED 99.6 SQ:SECSTR cEEEEEccEEEcTTccccccTTccccccTTccEEEcHHHHHHHHHHHHHHHTTcccEEEEEEEEcTTHHHHHHHHHHHTccEEEEEEccHHccHHHHHHHHHHHHHHTTccEEEEEcccTTTccccHHHHHHHHHTccEEEEEEEEEEcccEEEEEEEETTEEEEEEEEccEEEEEcTTccccccccHHHHHHHTTccEEEEcGGGGTccccccccccccccccccccccccccHHHHHHHHHHTTcc# DISOP:02AL 219-233| PSIPRED cEEEEEEEEcccccccEEEEEcccEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHcccEEEEEEEEEEEccEEEEEEEccccEEEEEEcccEEEEEEccccccccccHHHHHHHccccEEEEcHHHccccccccEEEEEEccccccccccccccHHHHHHHHHHHcccc //