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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : fdhD
DDBJ      :fdhD         formate dehydrogenase  chain D
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  475/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.97.1
:280 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   166->277 2pw9D PDBj 2e-12 33.0 %
:RPS:SCOP  45->277 2pw9A1  c.97.1.5 * 1e-41 26.3 %
:RPS:PFM   45->276 PF02634 * FdhD-NarQ 1e-35 39.7 %
:HMM:PFM   25->276 PF02634 * FdhD-NarQ 2.9e-70 42.9 231/236  
:BLT:SWISS 46->277 FDHD_SULTO 6e-41 43.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21500.1 GT:GENE fdhD GT:PRODUCT formate dehydrogenase chain D GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(666877..667719) GB:FROM 666877 GB:TO 667719 GB:DIRECTION - GB:GENE fdhD GB:PRODUCT formate dehydrogenase chain D GB:PROTEIN_ID AAZ21500.1 GB:DB_XREF GI:71062497 GB:GENE:GENE fdhD LENGTH 280 SQ:AASEQ MNSKYKIQKYKSNNLNNVEDLISIEEPLEISIKFKTKETWIQNIISITMRTPGNDEDLVRGFLFNEKIIEKNEYIEKIESVGDYVGEYKLQNKIVVTLNNSENIDIDKIKRNFLTNSSCGVCGKTSLDSLEIIKKDKVLKSLPKISKEIIIKSPSVLRDNQSEFSKTGGIHASGLFTSDGGIVCVKEDVGRHNALDKLIGYSLNKGLLTPSSQFITCSGRLNFELVQKVLMTNIGILIGVGAPTSLAIDLANKFDITLIGFVKEDSFNIYSNKDRVIIKG GT:EXON 1|1-280:0| BL:SWS:NREP 1 BL:SWS:REP 46->277|FDHD_SULTO|6e-41|43.0|214/255| SEG 19->32|edlisieepleisi| SEG 65->79|nekiiekneyiekie| SEG 139->155|lkslpkiskeiiiksps| BL:PDB:NREP 1 BL:PDB:REP 166->277|2pw9D|2e-12|33.0|109/237| RP:PFM:NREP 1 RP:PFM:REP 45->276|PF02634|1e-35|39.7|219/234|FdhD-NarQ| HM:PFM:NREP 1 HM:PFM:REP 25->276|PF02634|2.9e-70|42.9|231/236|FdhD-NarQ| GO:PFM:NREP 2 GO:PFM GO:0008863|"GO:formate dehydrogenase activity"|PF02634|IPR003786| GO:PFM GO:0009326|"GO:formate dehydrogenase complex"|PF02634|IPR003786| RP:SCP:NREP 1 RP:SCP:REP 45->277|2pw9A1|1e-41|26.3|194/231|c.97.1.5| OP:NHOMO 591 OP:NHOMOORG 510 OP:PATTERN ------11111111111---------------2-1111111111212211-1-------1-111---- ---111-1111---11111-11--121111111111112211-11-11----1211-1----1-1121111--------1111----------------------1-1----------------------------11111---------11-----------------11------------11-11---1-12222222212222221111112211111---1111111-1111111111111111--11-----------------------------------------------------------------------11-1-----------1----------13--11111111-111-------11-111------113111-1121111111111--11-111111111---11111111112111--1111111111111111111-11-12-------------------------------1--11-111-12221221111122111111112112232-1222211--1---2133--11111----------1---111111111111--313-2121-1111113211---11111--1-------131--2223----3-1-11-111-1221111121111-------------11111111111111111-111111111111111111111111111111111111111111111111111--111111111111-------------1---1111111111111--111111-11111-11111121111112111----------111111111121111111111111------------------------------------------------------------11- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 109 STR:RPRED 38.9 SQ:SECSTR #####################################################################################################################################################################HHcccEEEEEE#ETTEEEEEEEEccHHHHHHHHHH#HHHTTccccccEEEE#cccccHHHHHHHHHTTccEEEEcccccHHHHHHHHHHTcEEEEEEETTEEEEEEcGGGcc### DISOP:02AL 1-2| PSIPRED cccEEEEEEEEccEEEEEccEEEccEEEEEEEcccEEEEEEEccEEEEEEccccHHHHHHHHHHHccccccHHHHcccEEEcccccccccccEEEEEEcccccccHHHcccEEEEccccccccHHHHHHHHHcccccccccccEEcHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHccccccccEEEEEEccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEEEEEccEEEEEEcccEEEEEc //