[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : fdhF
DDBJ      :fdhF         formate dehydrogenase Alpha subunit (fdhF-2)
Swiss-Prot:             

Homologs  Archaea  58/68 : Bacteria  731/915 : Eukaryota  156/199 : Viruses  0/175   --->[See Alignment]
b.52.2c.81.1d.15.4d.58.1
:922 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   53->220 1fehA PDBj 4e-17 26.5 %
:BLT:PDB   231->911 1fdiA PDBj e-129 37.3 %
:RPS:PDB   10->216 2bs2B PDBj 2e-10 14.5 %
:RPS:PDB   231->904 1aa6A PDBj e-139 34.8 %
:RPS:SCOP  10->86 2fug33  d.15.4.2 * 4e-05 34.2 %
:RPS:SCOP  89->219 2fug34  d.58.1.5 * 1e-16 26.8 %
:RPS:SCOP  231->834 1ogyA2  c.81.1.1 * e-135 24.8 %
:RPS:SCOP  821->867 1oz4A1  b.52.2.3 * 2e-07 14.9 %
:HMM:SCOP  7->138 1fehA2 d.15.4.2 * 8.7e-22 34.7 %
:HMM:SCOP  87->222 2fug34 d.58.1.5 * 8e-38 39.4 %
:HMM:SCOP  196->253 1durA_ d.58.1.1 * 3.1e-06 27.3 %
:HMM:SCOP  230->795 1kqfA2 c.81.1.1 * 7.6e-186 39.8 %
:HMM:SCOP  754->903 1kqfA1 b.52.2.2 * 1.5e-31 29.5 %
:RPS:PFM   95->135 PF10588 * NADH-G_4Fe-4S_3 6e-10 43.9 %
:RPS:PFM   200->219 PF00037 * Fer4 5e-04 55.0 %
:RPS:PFM   231->276 PF04879 * Molybdop_Fe4S4 5e-10 50.0 %
:RPS:PFM   287->707 PF00384 * Molybdopterin 1e-78 42.6 %
:RPS:PFM   793->866 PF01568 * Molydop_binding 8e-11 35.1 %
:HMM:PFM   287->706 PF00384 * Molybdopterin 7.6e-87 29.3 413/432  
:HMM:PFM   793->896 PF01568 * Molydop_binding 4.6e-23 30.1 103/109  
:HMM:PFM   95->135 PF10588 * NADH-G_4Fe-4S_3 8.1e-19 51.2 41/41  
:HMM:PFM   231->282 PF04879 * Molybdop_Fe4S4 3.8e-19 42.3 52/55  
:HMM:PFM   156->170 PF00037 * Fer4 5e-06 46.7 15/24  
:HMM:PFM   201->219 PF00037 * Fer4 1.6e-08 47.4 19/24  
:BLT:SWISS 4->914 FDHL_STAHJ e-152 35.3 %
:PROS 203->214|PS00198|4FE4S_FER_1
:PROS 235->253|PS00551|MOLYBDOPTERIN_PROK_1
:PROS 39->56|PS00641|COMPLEX1_75K_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21498.1 GT:GENE fdhF GT:PRODUCT formate dehydrogenase Alpha subunit (fdhF-2) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(662447..665215) GB:FROM 662447 GB:TO 665215 GB:DIRECTION - GB:GENE fdhF GB:PRODUCT formate dehydrogenase Alpha subunit (fdhF-2) GB:PROTEIN_ID AAZ21498.1 GB:DB_XREF GI:71062495 GB:GENE:GENE fdhF LENGTH 922 SQ:AASEQ MSSEKRKIAYIDGKPYEIGPNHTSVLNFVKSYLGEKKVPTLCDDPNLAPYGACRVCSVEVALVKDGPTKVVASCHTPVGENQYIFTNNENLTALRKNIVELVLTDHPMECGTCEVNNNCELQDVANDLGISDHRYNTPKQHKGIPRDTSHDYMRMNLDNCINCGRCVRACDEIQGSFVLTMSGRGFESKITTDNDALFGDSSCVSCGACAHTCPTDAISDVYQSKSVAVDKKVRTTCSYCGVGCNLEASIKDNKVVAISTPKESEVNAGHTCIKGRYAFGFYDHPDRLKTPLIKKNGKFEEASWDEAYDFIKKELNRITKESGPDAVAGISSARCTNEENYVFQKMIRAAIGTNNIDCCARICHSPTAWGMQQTFGTGAATNSTEDIYHADLFMVIGANPTNAHPVTGAKIKQQVMKGKKLIVLDPITTELAKLADYHIKLRPGTNVAVLNMMLHFILKANLYDKDFVRDRTEGFANFIKEIERQDMDHLAKVAGVDKQLVKEAAIAYATAKNSMEFHGLGVTEQEQGSKTVMLIADLAMITGNIGRKGVGVNPLRGQNNVQGAADMGCQPHQGAGYFEVADEKVQNFYTEKYGVVHPTKAGLKIPEMFDGAINKEVKAVWIIGEDIVQTDPNSAHVVQAMNSLELLVVQEIFMSETAKLATVVLPGTTFLEKNGTFTNTERRIQRVNRAVPPLPGTKTDGTIVTDMMQKLGFDQPEYDADQVLAEIADIVPFFKGVTRERLGKMGLQWPVQEDGTDTQILHKETFKLGKGRLKNFDWKESTEIETNKKEYPLILTTSRVLQHYNAATMTRRTSNINIVSEDLLLVHPNDANKRELNTGDIGRLYSGRGEVALKVEVTDKVKEGIVFTTFHFPEHMVNMVTGHGKDEETMCAEYKVSAVEVQKISNQFKTEIKPKENQAEVN GT:EXON 1|1-922:0| BL:SWS:NREP 1 BL:SWS:REP 4->914|FDHL_STAHJ|e-152|35.3|897/984| PROS 203->214|PS00198|4FE4S_FER_1|PDOC00176| PROS 235->253|PS00551|MOLYBDOPTERIN_PROK_1|PDOC00392| PROS 39->56|PS00641|COMPLEX1_75K_1|PDOC00554| BL:PDB:NREP 2 BL:PDB:REP 53->220|1fehA|4e-17|26.5|162/574| BL:PDB:REP 231->911|1fdiA|e-129|37.3|679/714| RP:PDB:NREP 2 RP:PDB:REP 10->216|2bs2B|2e-10|14.5|186/239| RP:PDB:REP 231->904|1aa6A|e-139|34.8|670/696| RP:PFM:NREP 5 RP:PFM:REP 95->135|PF10588|6e-10|43.9|41/41|NADH-G_4Fe-4S_3| RP:PFM:REP 200->219|PF00037|5e-04|55.0|20/24|Fer4| RP:PFM:REP 231->276|PF04879|5e-10|50.0|46/55|Molybdop_Fe4S4| RP:PFM:REP 287->707|PF00384|1e-78|42.6|411/423|Molybdopterin| RP:PFM:REP 793->866|PF01568|8e-11|35.1|74/112|Molydop_binding| HM:PFM:NREP 6 HM:PFM:REP 287->706|PF00384|7.6e-87|29.3|413/432|Molybdopterin| HM:PFM:REP 793->896|PF01568|4.6e-23|30.1|103/109|Molydop_binding| HM:PFM:REP 95->135|PF10588|8.1e-19|51.2|41/41|NADH-G_4Fe-4S_3| HM:PFM:REP 231->282|PF04879|3.8e-19|42.3|52/55|Molybdop_Fe4S4| HM:PFM:REP 156->170|PF00037|5e-06|46.7|15/24|Fer4| HM:PFM:REP 201->219|PF00037|1.6e-08|47.4|19/24|Fer4| GO:PFM:NREP 6 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00037|IPR001450| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF00037|IPR001450| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF04879|IPR006963| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00384|IPR006656| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01568|IPR006657| GO:PFM GO:0030151|"GO:molybdenum ion binding"|PF01568|IPR006657| RP:SCP:NREP 4 RP:SCP:REP 10->86|2fug33|4e-05|34.2|73/77|d.15.4.2| RP:SCP:REP 89->219|2fug34|1e-16|26.8|127/143|d.58.1.5| RP:SCP:REP 231->834|1ogyA2|e-135|24.8|592/670|c.81.1.1| RP:SCP:REP 821->867|1oz4A1|2e-07|14.9|47/80|b.52.2.3| HM:SCP:REP 7->138|1fehA2|8.7e-22|34.7|124/0|d.15.4.2|1/1|2Fe-2S ferredoxin-like| HM:SCP:REP 87->222|2fug34|8e-38|39.4|132/0|d.58.1.5|1/1|4Fe-4S ferredoxins| HM:SCP:REP 196->253|1durA_|3.1e-06|27.3|55/55|d.58.1.1|2/2|4Fe-4S ferredoxins| HM:SCP:REP 230->795|1kqfA2|7.6e-186|39.8|558/817|c.81.1.1|1/1|Formate dehydrogenase/DMSO reductase, domains 1-3| HM:SCP:REP 754->903|1kqfA1|1.5e-31|29.5|149/0|b.52.2.2|1/1|ADC-like| OP:NHOMO 3665 OP:NHOMOORG 945 OP:PATTERN ---3-331323433324-544334511-51342-4313333342547A41341332234421221--- 336271-1111--155533-39--57333333777754783424221-2---4351-1--22423476962--------5SJ242424--1--1-----1-21-142311--------------1--2224-211256655434434332333112211121122123322------------442432213-52222222212222222355252211321--1111111311111111111111111--111---------------------------------------------------------------------277131111111213442213332-313D1-36hd588D376A11131--342433211111388573185A49633333332324-8898898A551167766765877766412746685564644444444833-58231111111111111111111111111111122443-4442587787777888AA7899995897CA9B91488667455635A7676535544511111111139881EFC54776B555B-9A8B96777886836CJ557424366131422222227C576446433245-3-45597829C877678A86BA1--2632111111C9765A39AAA985A79-799B8899999A97A99969BA7742998A589B99998C869776587751-65456666666611111111111116257244456322121232344444232433277789674668885565111111111233371222266455332434422211112161331111--------1---------------------------2132222222351 ------1-211-1211112222121212111111112111111111-111121212221111111----1--111------11111---11111111111111122-1-121322111-1111111-117A1-1211-1-3-11111-1-11-1-111112212112211-131-1121I111314116121-12---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 909 STR:RPRED 98.6 SQ:SECSTR #########EEEEEEEEccTTTccHHHHHHHHHHHTTTcTTcccccccccccccTTEEEEEcccTTEEEEGGGccGGGcTTcEEEEEHHHcccTTcEEEETTEEEcHHHHHHHHHHTTccccccccccTTcccccccHHHHHHHHHEEETTEEEEHHHTcccccHHHHTcHHHHHcHHTcTTccccHHHHHHHHccTTTGGGEEEHHHEEEHHHHHHHHHHHHHHHHccTEEEEEEccccTTccEEEEEEccccEEEEEEEcccTTTTTcccHHHHHTTccccccccccccEEccccccEEccHHHHHHHHHHHHHHHHHHHcGGGEEEEccccTTHHHHHHHHHHHHTHTTccccEEccGGGcHHHHHHHHHHHccccccccGGGGGGccEEEEEcccHHHHcHHHHHHHHHHHHTTcEEEEEcccccGGGGGccEEEcccTTcHHHHHHHHHHHHHHTTcccHHHHHHHEEcHHHHHHHHTTccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcHHHHccTTHHHHHHHHHHHHHHTTccccTTccEEEccccTTHHHHHHTTccTTEETTTEETTcHHHHHHHHHHTTccccccccccGGGHHHHHHTTcccEEEEEcccHHHHcTTTHHHHHHHHHccEEEEEEccccHHHHTccEEEEcccGGGccEEEEcTTcEEEEEccccccccccccHHHHHHHHHHHTTcccccccHHHHHHHHHHHcTTTTTccHHHHTTTcEEcccccccTTcccccccccccTTccEEccccccccccccccccccEEEEEcccTTccTTcTTGGGcHHHHcccccEEEEEHHHHHHHTccTTcEEEEEETTEEEEEEEEEEccccTTEEEEcccccccccTTcEEEEEEEcccHHHHHHHHHHHHHHcTcccccccccccc#### DISOP:02AL 1-4, 915-922| PSIPRED cccccEEEEEEccEEEEEcccccHHHHHHHHHHccccccEEEEcccccccccccEEEEEEEcccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccEEEcccccccccHHHHHHHHHccccEEEEEEccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHccccccccEEEccccEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHcccEEEEcccccHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHccccEEEEEEcHHHHcccHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHcccHHHHHHHHHHccccEEEEEccccHHHHcccHHHHHHHHHcccEEEEEccccccHHHHccEEEccccccccccEEEccccEEEEEEHHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccccccccccccEEEcccccccccccccccccEEEEccccccEEccEEEEccHHHHHcccccEEEEcHHHHHHHccccccEEEEEEcccEEEEEEEEcccccccEEEEEEccccccccccccccccccccccccccEEEEEEEccccccccccccccccccc //