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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : fdsB
DDBJ      :fdsB         NAD-dependent formate dehydrogenase beta subunit
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  547/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
a.29.12c.108.1c.142.1c.47.1d.15.13
:509 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   135->500 3i9v1 PDBj 3e-79 41.0 %
:RPS:SCOP  64->142 1qyiA  c.108.1.13 * 3e-04 30.8 %
:RPS:SCOP  123->331 2fug12  c.142.1.1 * 2e-72 47.8 %
:RPS:SCOP  333->411 2fug13  d.15.13.1 * 5e-15 32.9 %
:RPS:SCOP  419->500 2fug11  a.29.12.1 * 6e-05 29.3 %
:HMM:SCOP  1->117 2fug21 c.47.1.21 * 1.6e-08 22.8 %
:HMM:SCOP  90->332 2fug12 c.142.1.1 * 4.5e-73 43.6 %
:HMM:SCOP  333->415 2fug13 d.15.13.1 * 5.1e-17 32.5 %
:HMM:SCOP  416->507 2fug11 a.29.12.1 * 4.5e-19 38.0 %
:RPS:PFM   142->308 PF01512 * Complex1_51K 3e-49 58.3 %
:HMM:PFM   142->309 PF01512 * Complex1_51K 1e-46 43.8 146/151  
:HMM:PFM   420->454 PF10589 * NADH_4Fe-4S 3.1e-13 45.7 35/46  
:HMM:PFM   342->382 PF10531 * SLBB 1.6e-08 40.0 40/59  
:HMM:PFM   4->90 PF01257 * Complex1_24kDa 2.3e-06 26.7 86/145  
:BLT:SWISS 135->500 NQO1_THET8 1e-78 41.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21499.1 GT:GENE fdsB GT:PRODUCT NAD-dependent formate dehydrogenase beta subunit GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(665215..666744) GB:FROM 665215 GB:TO 666744 GB:DIRECTION - GB:GENE fdsB GB:PRODUCT NAD-dependent formate dehydrogenase beta subunit GB:PROTEIN_ID AAZ21499.1 GB:DB_XREF GI:71062496 GB:GENE:GENE fdsB LENGTH 509 SQ:AASEQ MGVSTIHGAESFYEFLRPSHREKKAFVCNGSACMCAGTQEPLKKKLQEKLGDDKVGEMFCLGHCYENNAFHYDGENYAGNDINKIDQIIKGEDIVQEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPTGMKWDFCRKAPSEKKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGVLYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGTKLVCFDSFFNNPGVYEVEMGTPMKKVLNDIGGGFKEPIKALQIGGPLGGVIPITEIEKLNLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGSYRGKEMFDQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEMKDDMVKDN GT:EXON 1|1-509:0| BL:SWS:NREP 1 BL:SWS:REP 135->500|NQO1_THET8|1e-78|41.0|366/438| SEG 39->50|qeplkkklqekl| BL:PDB:NREP 1 BL:PDB:REP 135->500|3i9v1|3e-79|41.0|366/437| RP:PFM:NREP 1 RP:PFM:REP 142->308|PF01512|3e-49|58.3|156/162|Complex1_51K| HM:PFM:NREP 4 HM:PFM:REP 142->309|PF01512|1e-46|43.8|146/151|Complex1_51K| HM:PFM:REP 420->454|PF10589|3.1e-13|45.7|35/46|NADH_4Fe-4S| HM:PFM:REP 342->382|PF10531|1.6e-08|40.0|40/59|SLBB| HM:PFM:REP 4->90|PF01257|2.3e-06|26.7|86/145|Complex1_24kDa| GO:PFM:NREP 4 GO:PFM GO:0010181|"GO:FMN binding"|PF01512|IPR011538| GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF01512|IPR011538| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01512|IPR011538| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF01512|IPR011538| RP:SCP:NREP 4 RP:SCP:REP 64->142|1qyiA|3e-04|30.8|78/380|c.108.1.13| RP:SCP:REP 123->331|2fug12|2e-72|47.8|209/243|c.142.1.1| RP:SCP:REP 333->411|2fug13|5e-15|32.9|79/84|d.15.13.1| RP:SCP:REP 419->500|2fug11|6e-05|29.3|82/105|a.29.12.1| HM:SCP:REP 1->117|2fug21|1.6e-08|22.8|114/0|c.47.1.21|1/1|Thioredoxin-like| HM:SCP:REP 90->332|2fug12|4.5e-73|43.6|243/0|c.142.1.1|1/1|Nqo1 FMN-binding domain-like| HM:SCP:REP 333->415|2fug13|5.1e-17|32.5|83/0|d.15.13.1|1/1|Nqo1 middle domain-like| HM:SCP:REP 416->507|2fug11|4.5e-19|38.0|92/0|a.29.12.1|1/1|Nqo1C-terminal domain-like| OP:NHOMO 1107 OP:NHOMOORG 724 OP:PATTERN ------------------------1---11----1---------1--1----------1-1------- 11221---------12211-12--23111111322211111121-1--1-----1-----11111123311----------1-11112--1--1-----1-11--21111--------------1-----1---1-22222333111111111--11------11--11--------------11111331--------------------------------------------------------------1---------------------------------------------------------------------144-2133244312121------4-2123-123113436341222121--3--111111111233221133333311111111111-33333433221122223332223333112222333322311111111322-23111111111111111111111111111111121221-22112222222222222222222222223344412331331222223323321222121111111113232131-4-1--3-----343243275111111641--1---------------------11112---2---1-------------1----21--221111111111111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111111111111115-121-----1---------11111111111-1111221122222-1111111111111--------------111111111111111112111111------------------------------------3233333333221 ----111-211-11111111111111111121111111121111111111111111111111111----1--211------1111111-12111111111111112-1-1115221-111-11111111391-112--1111111-111-11-11-11111111111411311111111H1112131341111131111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 366 STR:RPRED 71.9 SQ:SECSTR ######################################################################################################################################HHHHHHHTTTcccTTTTcccHHHHHTTcccccccccEEEEEcccccTTcccHHHHHHHcHHHHHHHHHHHHHHHTccEEEEEEcTTcHHHHHHHHHHHHHHHHTTcccTTGGGcccccEEEEEEccccGGGGcHHHHHHHHTTcccccccccccTTTccGGGccEEEEEHHHHHTHHHHHHccHHHHHTccccccccEEEEEEEccccccEEEEEETTccHHHHHHTTTccccccEEEEEccccccccEEccHHHTccccTTTTGGGcccccccEEEEEETTccHHHHHHHHHHHHHHHcccccHHHHTTTHHHHHHHHHTTTcccHHHHHHHHHHHHHHTTccccTHHHHHHHHHHHHHHHHHHH######### DISOP:02AL 1-2, 508-509| PSIPRED ccccHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHcccEEccccccHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccHHHHHHHHcccEEcccccccccccccccccccEEEcHHHHHHHHHHHHHcHHHHHHcccccccccEEEEEEcccccccEEEEEccccHHHHHHHHcccccccccEEEEcccccccccHHHHccccccHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHccc //