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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : fmt
DDBJ      :fmt          Methionyl-tRNA formyltransferase
Swiss-Prot:FMT_PELUB    RecName: Full=Methionyl-tRNA formyltransferase;         EC=2.1.2.9;

Homologs  Archaea  4/68 : Bacteria  900/915 : Eukaryota  161/199 : Viruses  0/175   --->[See Alignment]
b.46.1c.65.1
:310 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->296 2fmtA PDBj 3e-43 32.3 %
:RPS:PDB   4->295 2cfiA PDBj 5e-69 23.8 %
:RPS:SCOP  54->196 1c2tA  c.65.1.1 * 4e-32 21.0 %
:RPS:SCOP  207->307 1fmtA1  b.46.1.1 * 8e-19 21.0 %
:HMM:SCOP  3->209 2blnA2 c.65.1.1 * 2.3e-57 41.9 %
:HMM:SCOP  207->307 1fmtA1 b.46.1.1 * 4.8e-21 35.0 %
:RPS:PFM   72->181 PF00551 * Formyl_trans_N 2e-21 42.7 %
:RPS:PFM   206->298 PF02911 * Formyl_trans_C 1e-10 38.0 %
:HMM:PFM   3->181 PF00551 * Formyl_trans_N 4.2e-36 31.4 175/181  
:HMM:PFM   206->299 PF02911 * Formyl_trans_C 2.4e-23 40.9 93/100  
:BLT:SWISS 1->310 FMT_PELUB e-177 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21279.1 GT:GENE fmt GT:PRODUCT Methionyl-tRNA formyltransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 452267..453199 GB:FROM 452267 GB:TO 453199 GB:DIRECTION + GB:GENE fmt GB:PRODUCT Methionyl-tRNA formyltransferase GB:PROTEIN_ID AAZ21279.1 GB:DB_XREF GI:71062276 GB:GENE:GENE fmt LENGTH 310 SQ:AASEQ MTKKIVFMGTPFFAVPILKSLYEKNYIIPAVYTQPPKKSQRGQKINKSPIQIVAEDYNIDCRTPDTLKTNKEEYEYLKQLDLDLVIVVAYGQIIPKEYLNLAKKGFINIHASLLPKWRGAAPIQRSIMNLEKETGISIMKIGEKLDTGPVGNIYRIKIKDSDNAETISTKLSILASEKIIENVENIFEDKLTFKEQDDTSATYASKIEKSEGEIKWNDNAESIIGKINGLYPSPGAFFIFKDERYKILKAELGNKSGEIGEVMSNDLEISCGNQKSIKIIEIQRQGKKPQNINEFVLGSQIIKGSRITNV GT:EXON 1|1-310:0| SW:ID FMT_PELUB SW:DE RecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; SW:GN Name=fmt; OrderedLocusNames=SAR11_0457; SW:KW Complete proteome; Methyltransferase; Protein biosynthesis;Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->310|FMT_PELUB|e-177|100.0|310/310| GO:SWS:NREP 3 GO:SWS GO:0008168|"GO:methyltransferase activity"|Methyltransferase| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| BL:PDB:NREP 1 BL:PDB:REP 4->296|2fmtA|3e-43|32.3|291/314| RP:PDB:NREP 1 RP:PDB:REP 4->295|2cfiA|5e-69|23.8|286/310| RP:PFM:NREP 2 RP:PFM:REP 72->181|PF00551|2e-21|42.7|110/179|Formyl_trans_N| RP:PFM:REP 206->298|PF02911|1e-10|38.0|92/100|Formyl_trans_C| HM:PFM:NREP 2 HM:PFM:REP 3->181|PF00551|4.2e-36|31.4|175/181|Formyl_trans_N| HM:PFM:REP 206->299|PF02911|2.4e-23|40.9|93/100|Formyl_trans_C| GO:PFM:NREP 4 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00551|IPR002376| GO:PFM GO:0016742|"GO:hydroxymethyl-, formyl- and related transferase activity"|PF00551|IPR002376| GO:PFM GO:0009058|"GO:biosynthetic process"|PF02911|IPR005793| GO:PFM GO:0016742|"GO:hydroxymethyl-, formyl- and related transferase activity"|PF02911|IPR005793| RP:SCP:NREP 2 RP:SCP:REP 54->196|1c2tA|4e-32|21.0|143/210|c.65.1.1| RP:SCP:REP 207->307|1fmtA1|8e-19|21.0|100/108|b.46.1.1| HM:SCP:REP 3->209|2blnA2|2.3e-57|41.9|203/0|c.65.1.1|1/1|Formyltransferase| HM:SCP:REP 207->307|1fmtA1|4.8e-21|35.0|100/108|b.46.1.1|1/1|FMT C-terminal domain-like| OP:NHOMO 1396 OP:NHOMOORG 1065 OP:PATTERN -------------------------------------------1-1--1--1---------------- 1111111111121221111-11111211111111111222111211111111111111221211222122111111111111111111211111111--1121211112211111111111111111111111111111111111111111111111111111111111112112212122121111111111111111212112111211111111112111111111112111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111111111112211111111121211111111111111211111111111111111111111111111111111122222222221-11211213111111111121112211111111111111111111111111111111111111111111111111111111111111111112311222222222222222122222222221223222111111111111121111221111111211111111112111212211221231221111111111211111112311111111111121112211121111121111111111111111211-1111111111111222222222222222-222222222222222222222222232212222222222222122121122222222222222221131111111111111121111111111111111111111111112222122211111112212212122211112111111121111111111111111121111111111111111111----1-111-111---1111111111121211111121 1---12--1---1111111-1--111-11-1111-1-11111111111112-1--1--1111111111111-111-----111111----111-111111--1111-11142333312111331322627G3-446121-31243-32213125222232122321-22221141121171111121111112121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 309 STR:RPRED 99.7 SQ:SECSTR cccEEEEEccHHHHHHHHHHHHHTTcEEEEEEEcccccccccHHHcccHHHHHHHHHTccEEEccccEETTEEcHHHHHTcccEEEEccccccccHHHHTccTTcEEEEEcccTTTTccccHHHHHHHTTccEEEEEEEEcccccccccEEEEEEEEccTTccHHHHHHHTTTHHHHHHHHHHHHHHTTcccccccccTTccccccccGGGGcccccccHHHHHHHHHTTTTTTcEEEEETTEEEEEEEEEcccTccccEEEETTEEEEEcTTccEEEEEEEEcTTccEEEGGGTHHHHTccTTccccc# DISOP:02AL 309-310| PSIPRED ccEEEEEEEccHHHHHHHHHHHHccccEEEEEEcccccccccccccccHHHHHHHHccccEEEEccccccHHHHHHHHHccccEEEEEcccccccHHHHHHccccEEEEccccccccccccHHHHHHHccccEEEEEEEEEEcccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccHHHcEEcccccHHHHHHHHccccccccEEEEEccEEEEEEEEEEccccccEEEEEEccEEEEEccccEEEEEEEEccccccccHHHHHcccccccccccccc //