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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ftsH
DDBJ      :ftsH         metalloprotease FtsH
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  198/199 : Viruses  2/175   --->[See Alignment]
a.269.1b.2.5c.37.1
:628 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   149->596 2ce7C PDBj e-118 57.3 %
:RPS:PDB   149->596 2dhrD PDBj 4e-94 50.9 %
:RPS:SCOP  171->217 1s9hC  c.37.1.20 * 5e-08 8.5 %
:RPS:SCOP  198->382 1a3qA2  b.2.5.3 * 1e-40 10.7 %
:RPS:SCOP  403->595 2ce7A1  a.269.1.1 * 1e-51 42.6 %
:HMM:SCOP  142->394 2ce7A2 c.37.1.20 * 2.1e-74 41.9 %
:HMM:SCOP  403->606 2di4A1 a.269.1.1 * 9.2e-71 49.5 %
:RPS:PFM   4->91 PF06480 * FtsH_ext 3e-12 43.0 %
:RPS:PFM   190->316 PF00004 * AAA 2e-32 58.1 %
:RPS:PFM   385->593 PF01434 * Peptidase_M41 6e-56 53.7 %
:HMM:PFM   383->593 PF01434 * Peptidase_M41 1.7e-81 53.1 211/213  
:HMM:PFM   190->321 PF00004 * AAA 3.9e-47 53.5 127/130  
:HMM:PFM   6->92 PF06480 * FtsH_ext 7.3e-13 26.7 86/110  
:HMM:PFM   154->222 PF06068 * TIP49 1.6e-07 46.8 62/398  
:BLT:SWISS 28->605 FTSH_RICPR e-180 59.7 %
:PROS 292->310|PS00674|AAA
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21422.1 GT:GENE ftsH GT:PRODUCT metalloprotease FtsH GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 586081..587967 GB:FROM 586081 GB:TO 587967 GB:DIRECTION + GB:GENE ftsH GB:PRODUCT metalloprotease FtsH GB:PROTEIN_ID AAZ21422.1 GB:DB_XREF GI:71062419 GB:GENE:GENE ftsH LENGTH 628 SQ:AASEQ MKNLAMWAVIVFLTIGLYNMFKNPQANVGKGNSIIFSEFLSEVDNGGVIKVDIQGNNIRGVLANGNTFSTYSPNYPNLIEKLSEKGVSISAAPLEDKMPSLFGVLLSWFPMLLLIAVWIFFMRQMQGGKGGAMGFGKSKAKMMNELKGKVTFDDVAGVEEAKEEVEEVVQFLKDPKKFSRLGGKIPRGCLLVGQPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNSPCIIFIDEIDAVGRSRGAGLGGGNDEREQTLNQLLVEMDGFDTNEGVIIIAATNRPDVLDPALLRPGRFDRQVVVGLPDIIGREKVLKVHVKKIKMAPDVNLRTVARGTPGFSGADLANIVNEAALLAARKNKRLVTLTEFEEARDKVMMGSERRSMVMTEEEKTLTAYHEAGHAIVTINEDAAHPIHKATIIPRGRALGMVMQLPERDQLSQTREQLHAQLAIAMGGRVAEEIIFGEDKVTTGASSDIEQATQRARAMVMQAGLSKELGPVAYGSNEEEVFLGRSVARTQNMSEETSRKVDSEIRKIVDKGYERARTVLTEKIDDLHKLAKALLTYETLTGEEIENLINKNIYPSNKEDLKVEDEDKGSALSSMGLKPKIVH GT:EXON 1|1-628:0| BL:SWS:NREP 1 BL:SWS:REP 28->605|FTSH_RICPR|e-180|59.7|573/637| PROS 292->310|PS00674|AAA|PDOC00572| TM:NTM 2 TM:REGION 1->23| TM:REGION 101->123| SEG 124->143|qmqggkggamgfgkskakmm| SEG 155->169|vagveeakeeveevv| SEG 258->268|grsrgaglggg| SEG 369->374|aallaa| BL:PDB:NREP 1 BL:PDB:REP 149->596|2ce7C|e-118|57.3|410/421| RP:PDB:NREP 1 RP:PDB:REP 149->596|2dhrD|4e-94|50.9|434/445| RP:PFM:NREP 3 RP:PFM:REP 4->91|PF06480|3e-12|43.0|86/99|FtsH_ext| RP:PFM:REP 190->316|PF00004|2e-32|58.1|117/123|AAA| RP:PFM:REP 385->593|PF01434|6e-56|53.7|203/206|Peptidase_M41| HM:PFM:NREP 4 HM:PFM:REP 383->593|PF01434|1.7e-81|53.1|211/213|Peptidase_M41| HM:PFM:REP 190->321|PF00004|3.9e-47|53.5|127/130|AAA| HM:PFM:REP 6->92|PF06480|7.3e-13|26.7|86/110|FtsH_ext| HM:PFM:REP 154->222|PF06068|1.6e-07|46.8|62/398|TIP49| GO:PFM:NREP 8 GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF06480|IPR011546| GO:PFM GO:0005524|"GO:ATP binding"|PF06480|IPR011546| GO:PFM GO:0008270|"GO:zinc ion binding"|PF06480|IPR011546| GO:PFM GO:0016021|"GO:integral to membrane"|PF06480|IPR011546| GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF01434|IPR000642| GO:PFM GO:0005524|"GO:ATP binding"|PF01434|IPR000642| GO:PFM GO:0006508|"GO:proteolysis"|PF01434|IPR000642| RP:SCP:NREP 3 RP:SCP:REP 171->217|1s9hC|5e-08|8.5|47/199|c.37.1.20| RP:SCP:REP 198->382|1a3qA2|1e-40|10.7|178/184|b.2.5.3| RP:SCP:REP 403->595|2ce7A1|1e-51|42.6|162/162|a.269.1.1| HM:SCP:REP 142->394|2ce7A2|2.1e-74|41.9|253/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 403->606|2di4A1|9.2e-71|49.5|202/0|a.269.1.1|1/1|FtsH protease domain-like| OP:NHOMO 7917 OP:NHOMOORG 1175 OP:PATTERN 44454466666666672222222588A88666343333333335555586787343454331222244 1223422222222244233-332244333334454533544544322131114342321134213343322222232211213111111112111111-11311111121111111111111111322332234232222221223C69A7776566555555666989C85555555555553342211121111111111111111121221211111121111111113411111111111111111111111111111111111111111111111111112111111111111111111111111111111111111124435454444425223334222333125334353333222253331111115111411111312453232231411111111112-57324233211122222344422112112112131111122222222311113111111111111111111111111111212512222112111322423222224436222212234142111531132212454131322211111111111222211221112221212111333233335445545362322222222222222222223234111111333111222332113232142221331-151111111111111111111-111121-11111111121111111111111122111111211211111111111111111111111111111111211111111122422111111112-2112112111111112222321122211214121112111111111211111111111221111111211111121222222111111111118BN91-11111111111111111111131111111331 HIDEQPN8*TXHPQRNLLJIJJJKJJJKKYKKJIJJJIGIJJIIJIKIKKLLPLHMLJJJIJJKILKKDIMKKJKKLAKMLKJKKKLL-NbLLNMJIHIJHGGQTUBPqVlghafelOOOKQSPfeJrJx*Z1aWqLKJIWIRVMLQLLISMLaLaSUTPhUSQPWOcRRsTZRONWcZ*VVVWX*o**LzxYaUWSUh -----------------------------------------------------------------------------------------------1--------------------------------------------------------------------------1---- DISOP:02AL 23-34, 123-148, 259-274, 395-405, 598-628| PSIPRED cHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccEEEEEEEccEEEEEEEcccEEEEEEcccHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccccccHHHHccHHHHHHHHHHHHHHHcccHHHHHccccccccEEEEccccccHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHcccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccEEEEcccHHHHHccHHHHHHHHHHHHccHHHHHEEEcccccEEcHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccc //