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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : gab
DDBJ      :gab          gab protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  61/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.82.2
:303 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->300 1jfyA PDBj 3e-55 40.8 %
:RPS:PDB   103->295 1dryA PDBj 3e-16 14.4 %
:RPS:SCOP  92->296 1drtA  b.82.2.2 * 8e-19 16.1 %
:HMM:SCOP  1->301 1jr7A_ b.82.2.3 * 1.2e-80 32.2 %
:RPS:PFM   40->300 PF08943 * CsiD 4e-70 46.4 %
:HMM:PFM   6->300 PF08943 * CsiD 7.9e-145 55.6 295/297  
:BLT:SWISS 37->300 CSID_ECOL5 3e-65 47.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22157.1 GT:GENE gab GT:PRODUCT gab protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1290213..1291124) GB:FROM 1290213 GB:TO 1291124 GB:DIRECTION - GB:GENE gab GB:PRODUCT gab protein GB:PROTEIN_ID AAZ22157.1 GB:DB_XREF GI:71063154 GB:GENE:GENE gab LENGTH 303 SQ:AASEQ MENISGITITEHQNSKRIIDIRIEDEILDKLIFPFNKFDITALEYKPFTRFTIAKSLDDLTSNKLSKLLNSIVRDRETGCFIIGPKKVSAKINDIFLVKLSTAIAYLIGNPNYDAMAGKYYARFFVKHEDKSDSYLRKAYTNMDLHTDGTYVKEITDWLLMTKIEEQNVQGGETAMLHLDDWEHCEDLFNDPIGKQNFVWGSPKSKNIEYKVEHPVFTTDDNGKPNISYIDQFPEPKNMDQGIFLQKLSDALEESKNKVITKLVPGSTIVANNYFWLHGRKPFKENKDLSRELLRIRGSFFIN GT:EXON 1|1-303:0| BL:SWS:NREP 1 BL:SWS:REP 37->300|CSID_ECOL5|3e-65|47.3|264/325| SEG 16->32|kriidiriedeildkli| SEG 55->71|kslddltsnklskllns| BL:PDB:NREP 1 BL:PDB:REP 2->300|1jfyA|3e-55|40.8|294/306| RP:PDB:NREP 1 RP:PDB:REP 103->295|1dryA|3e-16|14.4|188/316| RP:PFM:NREP 1 RP:PFM:REP 40->300|PF08943|4e-70|46.4|261/296|CsiD| HM:PFM:NREP 1 HM:PFM:REP 6->300|PF08943|7.9e-145|55.6|295/297|CsiD| RP:SCP:NREP 1 RP:SCP:REP 92->296|1drtA|8e-19|16.1|193/315|b.82.2.2| HM:SCP:REP 1->301|1jr7A_|1.2e-80|32.2|301/0|b.82.2.3|1/1|Clavaminate synthase-like| OP:NHOMO 61 OP:NHOMOORG 61 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1-----------------------------1---------------------------------------------------------------------------------------------------------1---1--------------------------------1------1111111111-1111111111111111111111-----1111--11--111111-11-1111------------------------------1-------------------------------------111------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 299 STR:RPRED 98.7 SQ:SECSTR #cccccEEEEEccccTTEEEEEEcHHHHHHHHHHHTTccHHHHHHcTHHHHHHHHHHHHHTTTcHHHHHHHHHHcTTccEEEEEETTccccccHHHHHHHHHHHHHHHcEEcEETTcGGGcccEEEcccTTccTTcTcccccEEEEcTTTTcTTcccEEEEEEEEccTTccccEEEEEHHHGGGccHHHHHHHcTccEEEcccGGGccccEEEccEccEccTTccEEcccTTTcccccHHHHHHHHHHHHHHHHTTTcEEEcccTTcEEEEETTTEEEEEccccccccccccEEEEEEEE### DISOP:02AL 1-2| PSIPRED ccccccEEEcccccccEEEEEEEHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEccccHHHHHccHHEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHcccccccEEEccccccccHHHHHcccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEcccccEEEEEEEEEEEccccccccccHHHHHHHHcccEEEc //