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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : gabD
DDBJ      :gabD         succinate-semialdehyde dehydrogenase (NAD(P))
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  800/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.82.1
:480 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->473 3ifgA PDBj e-104 40.1 %
:RPS:PDB   3->477 3ek1B PDBj e-126 40.1 %
:RPS:SCOP  5->476 1uzbA  c.82.1.1 * e-118 27.7 %
:HMM:SCOP  1->477 1uzbA_ c.82.1.1 * 9.7e-162 41.9 %
:RPS:PFM   29->462 PF00171 * Aldedh 9e-98 42.7 %
:HMM:PFM   13->472 PF00171 * Aldedh 3.2e-163 44.8 458/462  
:BLT:SWISS 9->478 GABD_ECOLI e-112 41.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21584.1 GT:GENE gabD GT:PRODUCT succinate-semialdehyde dehydrogenase (NAD(P)) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 742383..743825 GB:FROM 742383 GB:TO 743825 GB:DIRECTION + GB:GENE gabD GB:PRODUCT succinate-semialdehyde dehydrogenase (NAD(P)) GB:PROTEIN_ID AAZ21584.1 GB:DB_XREF GI:71062581 GB:GENE:GENE gabD LENGTH 480 SQ:AASEQ MYEKFGQFIDGNWSPSSNKETYKVINPATEEVLGHASKATPVDVDRALKSAEKGLAIWRKTPPWQRAYTLRKIADMVREKKDVLAKWMTLENGKPLAEGVGETNGAADIFEWNAEETKRIYGQIVESRFEDTRVHVYYQPIGVVAALSPWNFPLVLAARKISTALAAGCSVIIKPDTITPGVVMELVDICRECGIPAGVVNLLSGDPPAIASQLISSDIIKKISVTGSTRVGKIILKQAADKLQRVTMELSGHSPFIVFDDADLNKATDIAIAAKFRNNGQVCISPNRFYIQESKKDEFVGLFIEKTKKLKIGNGMDPDTQLGPLTTQKRLNEVEELVEKTKQEGAKVLLGGKRPAGFNKGFYYEPTVFDDVKDDFTIMKQEPFGPLVPMLSFKSFDEVIERANDNDLGLCSYICTNSMDKAYRASELMEAGIACVNTGVVAVAEAPFGGIKQTGYGREGGSNAIKDYLNVKYTHMGIKG GT:EXON 1|1-480:0| BL:SWS:NREP 1 BL:SWS:REP 9->478|GABD_ECOLI|e-112|41.9|468/482| BL:PDB:NREP 1 BL:PDB:REP 8->473|3ifgA|e-104|40.1|464/482| RP:PDB:NREP 1 RP:PDB:REP 3->477|3ek1B|e-126|40.1|471/483| RP:PFM:NREP 1 RP:PFM:REP 29->462|PF00171|9e-98|42.7|431/440|Aldedh| HM:PFM:NREP 1 HM:PFM:REP 13->472|PF00171|3.2e-163|44.8|458/462|Aldedh| GO:PFM:NREP 3 GO:PFM GO:0008152|"GO:metabolic process"|PF00171|IPR015590| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00171|IPR015590| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00171|IPR015590| RP:SCP:NREP 1 RP:SCP:REP 5->476|1uzbA|e-118|27.7|466/516|c.82.1.1| HM:SCP:REP 1->477|1uzbA_|9.7e-162|41.9|472/516|c.82.1.1|1/1|ALDH-like| OP:NHOMO 10223 OP:NHOMOORG 1046 OP:PATTERN 221-1-4754454653-312111-A4432-521-11111111211222124431-1--1-13351--1 7994N947AAE547JPLAB-AO22JdAAAAAFTQWSMV**8M6U67781744VJPDA9--DEQ3BFMNKLB----111-122H11111--12-211---62637584756--------------12212221221276687---74556334413111113122324555411111111111166845-1-C89999998AAAA99887EDAA6B9ABAHFDF86222221D54555555555555558667711112311111121122-11122---2222111-221111111111122212222222222--111---2-12172223223221-31112223123131---2212---1--1---1118-6KFFA11111B6GBK546997A6FGHJFDHCHGH-46D43J6BOOB-NJJMMMVSOYRQE9CC5AGRCAAC8JKEDEEEEEEADC6466811111111----1111-1111-11-11118APcB2BPLDEeadcadTMMMHcbdfSRPOBPvXwOcWL14HDGD9DB9HENDLP333-112B62444444132AC664413331332222-3333435443333BC15211322211211111111112-11143981894L7DB9AAAAA9AC888997BC9BE-1-5421------A967587B998B878BC-9CAC988C7B98ABBABB9IKI999A4A98998999A77A797I773667621567688758888--1633122888817DLY222112-----2223ONPJL8H7C9H1KKKKLQPVHTTPNCKHJ3221132222433A566668B88B899A9A8555------11441111--------2-2----1---1-12-111-12--111111112-2-2-341 ----CCA-A54-9C8IJLLQNQKSTRSEECCCCEEDEFDEEEEBDDEDKUUg*pNMGCDDDDD9C6AA4B88D9A994998BA9AC57-JVEJCGEFDE9BAGFCF-9NBaOiJNOPCCEBFKGQQAVCt*Q-SPWDGE9REGPEAGEECIAAbEFDGNKdWCPFCATBEHAKOC5675*65569LFdWLJp88WGNLI ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 479 STR:RPRED 99.8 SQ:SECSTR ccccccEEETTEEEccTTccEEEEEcTTTccEEEEEEcccHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHTTcccEEEccccTTEEEEEEEEEccEEEEEcccccTTHHHHHHHHHHHHHTcEEEEEccTTcHHHHHHHHHHHHHTTccTTTEEEccccHHHHHHHHHHcTTEEEEEEEccHHHHHHHHHHHGGGTcEEEEEccccEEEEEcTTccHHHHHHHHHHHHHGGGGccTTcEEEEEEEHHHHHHHHHHHHHHHHTcccccTTcTTccccccccHHHHHHHHHHHHHHHHTTcEEEEcccEEcccTETTEEccEEEEEEcTTcGGGTccccccEEEEEEEccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHccccEEEEcccccccccccccccGGGEEccccHHHHGGGGEEEEEEEEEcc# DISOP:02AL 480-481| PSIPRED ccccccEEEccEEEccccccEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHccccEEEEEccccccEEEcccccHHHHHHHHHHHHHHHcccEEEcccEEEEEccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccccccccccEEccEEccccccccEEEEEcccccEEEEEEEccHHHHHHHHcccccccEEEEEcccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccHHHHHHHHcEEEEEEEEcc //