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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : gcpE
DDBJ      :gcpE         peptidoglycan acetylation
Swiss-Prot:ISPG_PELUB   RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;         EC=1.17.7.1;AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase;

Homologs  Archaea  0/68 : Bacteria  736/915 : Eukaryota  25/199 : Viruses  0/175   --->[See Alignment]
c.1.21d.134.1
:366 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   17->299 3e59B PDBj 3e-38 12.1 %
:RPS:SCOP  9->257 1q7mA1  c.1.21.2 * 5e-17 9.6 %
:RPS:SCOP  262->347 1aopA4  d.134.1.1 * 1e-07 17.4 %
:HMM:SCOP  16->209 1q7zA1 c.1.21.2 * 3.1e-07 20.2 %
:HMM:SCOP  264->351 1aopA4 d.134.1.1 * 5.2e-11 28.7 %
:RPS:PFM   14->359 PF04551 * GcpE 6e-81 45.8 %
:HMM:PFM   14->358 PF04551 * GcpE 2.2e-131 48.7 343/359  
:BLT:SWISS 1->366 ISPG_PELUB 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21339.1 GT:GENE gcpE GT:PRODUCT peptidoglycan acetylation GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 506212..507312 GB:FROM 506212 GB:TO 507312 GB:DIRECTION + GB:GENE gcpE GB:PRODUCT peptidoglycan acetylation GB:PROTEIN_ID AAZ21339.1 GB:DB_XREF GI:71062336 GB:GENE:GENE gcpE LENGTH 366 SQ:AASEQ MSLRPFRDIHRKKTKVINVGDVKIGGDNPISVQSMTNTLTTDIQATIKQINDIHEEGADLVRVSCPDEESSLALKEITKHVSVPIIADIHFHYKRAIEAAENGAKCLRINPGNIGDKLKIHDVLSAAKNNDCSIRIGVNAGSLEKDILEKYKEPCPEALVESAQRNIKILEDQDFFNFKISVKSSDIFLSIAAYRQLSKVTDYPLHLGITEAGGFVSGSVKSSIGLGSLLMDGIGDTIRISLSDDPVKEIKIGNEILKSLNLRNRGVKIISCPSCARQAFQVIDTVKILEDKLAHIKTPLTLSIIGCVVNGPGEAAMTDIGITGGGKGNNMLYLSGIQSEKVLSEDIISRVVSEVEKKAAELDKKL GT:EXON 1|1-366:0| SW:ID ISPG_PELUB SW:DE RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.17.7.1;AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; SW:GN Name=ispG; OrderedLocusNames=SAR11_0517; SW:KW 4Fe-4S; Complete proteome; Iron; Iron-sulfur; Isoprene biosynthesis;Metal-binding; Oxidoreductase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->366|ISPG_PELUB|0.0|100.0|366/366| GO:SWS:NREP 6 GO:SWS GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|4Fe-4S| GO:SWS GO:0051536|"GO:iron-sulfur cluster binding"|Iron-sulfur| GO:SWS GO:0008299|"GO:isoprenoid biosynthetic process"|Isoprene biosynthesis| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| RP:PDB:NREP 1 RP:PDB:REP 17->299|3e59B|3e-38|12.1|282/305| RP:PFM:NREP 1 RP:PFM:REP 14->359|PF04551|6e-81|45.8|343/353|GcpE| HM:PFM:NREP 1 HM:PFM:REP 14->358|PF04551|2.2e-131|48.7|343/359|GcpE| GO:PFM:NREP 3 GO:PFM GO:0016114|"GO:terpenoid biosynthetic process"|PF04551|IPR004588| GO:PFM GO:0046429|"GO:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"|PF04551|IPR004588| GO:PFM GO:0055114|"GO:oxidation reduction"|PF04551|IPR004588| RP:SCP:NREP 2 RP:SCP:REP 9->257|1q7mA1|5e-17|9.6|239/259|c.1.21.2| RP:SCP:REP 262->347|1aopA4|1e-07|17.4|86/145|d.134.1.1| HM:SCP:REP 16->209|1q7zA1|3.1e-07|20.2|183/0|c.1.21.2|1/1|Dihydropteroate synthetase-like| HM:SCP:REP 264->351|1aopA4|5.2e-11|28.7|87/145|d.134.1.1|1/1|Sulfite reductase hemoprotein (SiRHP), domains 2 and 4| OP:NHOMO 788 OP:NHOMOORG 761 OP:PATTERN -------------------------------------------------------------------- 111121111111-111111-1111211111111111111111111111111111111111111111122111111111111111111111111111---------1111111111111111111111111111111-----111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11-111--111-----------------------------------------------------------------------------------------1111111111111111111111111111111111111111111111111-111111111111111111111111111111111111-11111111111-11111111111111111111111111111111111111111111111111111---------------111111111111111111111111111111111111111111111111111111111111111111111111111211111-111111111111111111111111111--111111111111111111111111111111111111111111111111111111111111--11111--11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111-111---------1111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111--------11------------1------1------1111111111111 11------1---------------------------------------------------------------------------------------------------3-------------------------------------------------1---------------11111F111113122-2111----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 336 STR:RPRED 91.8 SQ:SECSTR HHTcccHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccTTTcccccccHHHHHHHHHHHHHHHHHHTTcTTcEEEEEEccHHHHGGGGTccHHHHHHHHHHHHHHHHHHTTcTTEEEEcGGGcGGGGGGcHHHHHHHHHHHHcccHHHHHHHHTTcHHHHHHHHHHHHHHHHHccTTccccHHHHHHHHHHHHHHHHHHHHHcTTcEEEEcccccTTccEEEccccTTccccccGGGcEEEEETTEEEEEcHHHHHEETTEEEEEEccccEEEEcTHTccTTcGGGccEEEEEEEETTEEEEEcc############################## DISOP:02AL 1-3, 365-366| PSIPRED ccccccccccccccEEEEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccccEEEEccccccccEEEccEEEccccHHHHHHHHHHHHHHHHHHHHccc //