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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : glcB
DDBJ      :glcB         malate synthase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  216/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.1.13
:731 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->729 1y8bA PDBj 0.0 53.7 %
:RPS:PDB   7->729 1d8cA PDBj 4e-73 42.4 %
:RPS:SCOP  7->729 1d8cA  c.1.13.1 * e-133 51.5 %
:HMM:SCOP  7->729 1d8cA_ c.1.13.1 * 4.5e-291 44.8 %
:RPS:PFM   21->128 PF01274 * Malate_synthase 3e-10 31.9 %
:RPS:PFM   240->676 PF01274 * Malate_synthase 2e-90 47.8 %
:HMM:PFM   22->703 PF01274 * Malate_synthase 2.3e-167 40.1 501/523  
:BLT:SWISS 10->728 MASZ_MESSB 0.0 56.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21332.1 GT:GENE glcB GT:PRODUCT malate synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(496262..498457) GB:FROM 496262 GB:TO 498457 GB:DIRECTION - GB:GENE glcB GB:PRODUCT malate synthase GB:PROTEIN_ID AAZ21332.1 GB:DB_XREF GI:71062329 GB:GENE:GENE glcB LENGTH 731 SQ:AASEQ MGAMKEQYTKIHNLSVSNKLLNFVNEELLKDTNISSEKFWEGFDQVVHELAPKNKELLKIREDLQKKIDDWHIANKGNEINLEEYKKFLKEIDYLKEVGPDFKIKTNNVDEEITSIAGPQLVVPIMNERYALNAANARWMSLYDSLYGTDVIDQSEDSPTQRYDPLRGEMVIKYGRDFLEKYFPLENFEWHNITAFKIDNGSLTVLKDSNKSSLKNKDKYIGHRGEANDPSAIILKNNNLHIEIIIDPNAFSAQQDPAKISDIIVEAAVSTICDNEDSVAAVDADDKVICYRNWLGLMKGDLKSTFEKNGKTYERKLNPDRSYISKDGKGLKLHGRSLLLVRNVGHLMTNSAITLKDGSEIPEGIMDAFITSAACLHDIKKKGNSRTGSIYIVKPKMHGPDETSFTDLIFTKVEEVLGLEKYTCKIGIMDEERRTSSNLKECIRTLQNRVFFINTGFLDRTGDEMHTSMEAGPMIKKGDMKSSKWIGAYENNNVDIGLQCGLSGKAQIGKGMWAMPDKMKEMMEQKTSHLNAGANCAWVPSPTAAALHALHYHEINIFEKQKEIQKRESAKLDDLLTIPVADRPNWSMEEINSEISNSAQTLLGYVVRWIDHGVGCSKVPDINNVGLMEDRATLRISSQHIANWIHHDICTKSQVMEVMKKMAKIVDDQNKNDGAYTRSGRGSYEMMSENFEQSIAFKTACDLIFKGKEQPSGYTEPLLHLNRLLKKSSQN GT:EXON 1|1-731:0| BL:SWS:NREP 1 BL:SWS:REP 10->728|MASZ_MESSB|0.0|56.1|710/732| SEG 206->219|lkdsnksslknkdk| SEG 279->288|vaavdaddkv| SEG 589->598|eeinseisns| BL:PDB:NREP 1 BL:PDB:REP 14->729|1y8bA|0.0|53.7|707/723| RP:PDB:NREP 1 RP:PDB:REP 7->729|1d8cA|4e-73|42.4|686/688| RP:PFM:NREP 2 RP:PFM:REP 21->128|PF01274|3e-10|31.9|95/500|Malate_synthase| RP:PFM:REP 240->676|PF01274|2e-90|47.8|404/500|Malate_synthase| HM:PFM:NREP 1 HM:PFM:REP 22->703|PF01274|2.3e-167|40.1|501/523|Malate_synthase| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF01274|IPR011076| GO:PFM GO:0003824|"GO:catalytic activity"|PF01274|IPR011076| RP:SCP:NREP 1 RP:SCP:REP 7->729|1d8cA|e-133|51.5|703/709|c.1.13.1| HM:SCP:REP 7->729|1d8cA_|4.5e-291|44.8|714/0|c.1.13.1|1/1|Malate synthase G| OP:NHOMO 232 OP:NHOMOORG 220 OP:PATTERN -------------------------------------------------------------------- -------111111211111-11111111111111111122-1-1----------------------------------------------------------------------------------------------------------------------------------------------------1----------------11-------111---1----------------------------------------------------------------------------------------------------------------------------------------------------------------211111111111111111111111---1--1-111--111111111111-1---1111111111--------111-1--------------------------------11111-111111111111----1121-----1121----11---1-111111111-------------------1-------111-1-111------------------------------------------------11-2-111------11------11-11----11--------------1--1111111--111111111-1111111-----------------------------111-----------------------------1111---------------11111111112-11111111211122211---------------------1--------------------------------------------------------------------------- -------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------11---------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 723 STR:RPRED 98.9 SQ:SECSTR ######cEEEETTEEEEHHHHHHHHHHTHHHHTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHTcccccccccccccccccHHHHTccccEEEEcETcHHHHHHHHGGGEEEHHHHHHTcccGccccccccccccHHHHHHHHHHHHHHHHHHcccccccGGGEEEEEEETTEEEEETTccEEccccGGGEEEEEccTTcccEEEEEETTEEEEEEEcTTcTTGGGcTTcEEEEEEEcccEEEEEccTTcccccHHHHHHHHHHHHHHHTccEEEcccccccEEEEEEEEETTEEETTccEEEEccccEEEEEcccccEEEEEEcTETTccEEEHHHHHHHHHHHHHHEccccHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHTcTTcEEEEEccHHHHHTHHHHHHTTTTTEEEEEEcHHHHHHHHHHTGGTTcTccccGGGGGcHHHHHHHHHHHHHHHHTTcTTTcEEEEEccTTcHHHHHTHHHHHTTccEEEEccHHHHHHHHHHHHccHHHHHHHHHHccGGGGHHHHHHHHTcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcTTccHEEccHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTcEEccGGGTTcTTccccETcTTTcHHHHHHHHHHHTGGGcGGGccHHHHHHHHHHHTTc## DISOP:02AL 1-5, 727-731| PSIPRED cccccccEEHHcccEEHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccEEEEEccccHHHHHccccEEEEEccccHHHHHHcccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHEEEEEccEEEEEccccccccccHHHHcccccccccccEEEEEEcccEEEEEEccccccccccHHHHHHHHHcccHHEEEccccccccccHHHHHHHHHHHHHHHccccccEEcccccEEEEccccccccccccccEEEEccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccHHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcc //