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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : glcD
DDBJ      :glcD         (S)-2-hydroxy-acid oxidase
Swiss-Prot:             

Homologs  Archaea  42/68 : Bacteria  659/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
d.145.1d.58.32
:498 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   55->332 2uuvD PDBj 3e-23 28.7 %
:RPS:PDB   24->479 1e8gA PDBj 4e-93 18.2 %
:RPS:SCOP  42->245 1mbbA1  d.145.1.2 * 4e-43 9.7 %
:RPS:SCOP  233->476 1f0xA1  d.58.32.2 * 9e-50 15.1 %
:HMM:SCOP  17->230 1f0xA2 d.145.1.1 * 3.4e-69 45.5 %
:HMM:SCOP  217->484 1e8gA1 d.58.32.1 * 3.5e-72 38.6 %
:RPS:PFM   57->194 PF01565 * FAD_binding_4 1e-22 39.7 %
:RPS:PFM   230->469 PF02913 * FAD-oxidase_C 4e-48 40.4 %
:HMM:PFM   230->470 PF02913 * FAD-oxidase_C 4.7e-62 36.5 241/249  
:HMM:PFM   55->193 PF01565 * FAD_binding_4 1.1e-41 36.5 137/138  
:BLT:SWISS 6->498 GLCD_ECOLI e-139 49.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21099.1 GT:GENE glcD GT:PRODUCT (S)-2-hydroxy-acid oxidase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(280945..282441) GB:FROM 280945 GB:TO 282441 GB:DIRECTION - GB:GENE glcD GB:PRODUCT (S)-2-hydroxy-acid oxidase GB:NOTE GlcD GB:PROTEIN_ID AAZ21099.1 GB:DB_XREF GI:71062096 GB:GENE:GENE glcD LENGTH 498 SQ:AASEQ MSELVLPKIDKATINKKEYIFKNLAKIINPENVLSHADDIKPYETDALAAYTQTPLAVVMPENTEEVSNILKFCHKENIKVVPRGAGTGLSGGALPLNDAILLSLGKFNKIIEIDFENKCVVTQPGVTNLGITHAVQHKNFYYAPDPSSQLACSIGGNVAENSGGVHSLKYGTTTNNILGVEMVMMDGTVCRVGGKTLDQEGYDLMGLICGSEGLLGVITEVTVKILKNPQVVKAALIGFPTIEEGGNAASEIISSGIVPAGMEIMDKALIEATDNFSKAGYPRDAELLLIVELDGTESEVDELLKQVRSICEKNNCSSLKLSKNEKERLSFWAGRKAAFPACGAMAPDYYCMDGSIPRGKLAEALLEIKRLSEKYKLPVANCFHAGDGNLHPLIMFDGSDKEQLRKTEEFGAEILKTCVRLGGVITGEHGVGVEKRELMCEMFNNTDIQQQLDIKKSLDEKNLLNPGKVYPILRKCAEEGRVHVHRNEEKFPDLPRF GT:EXON 1|1-498:0| BL:SWS:NREP 1 BL:SWS:REP 6->498|GLCD_ECOLI|e-139|49.7|487/499| BL:PDB:NREP 1 BL:PDB:REP 55->332|2uuvD|3e-23|28.7|261/528| RP:PDB:NREP 1 RP:PDB:REP 24->479|1e8gA|4e-93|18.2|455/550| RP:PFM:NREP 2 RP:PFM:REP 57->194|PF01565|1e-22|39.7|136/139|FAD_binding_4| RP:PFM:REP 230->469|PF02913|4e-48|40.4|240/242|FAD-oxidase_C| HM:PFM:NREP 2 HM:PFM:REP 230->470|PF02913|4.7e-62|36.5|241/249|FAD-oxidase_C| HM:PFM:REP 55->193|PF01565|1.1e-41|36.5|137/138|FAD_binding_4| GO:PFM:NREP 4 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01565|IPR006094| GO:PFM GO:0050660|"GO:FAD binding"|PF01565|IPR006094| GO:PFM GO:0003824|"GO:catalytic activity"|PF02913|IPR004113| GO:PFM GO:0050660|"GO:FAD binding"|PF02913|IPR004113| RP:SCP:NREP 2 RP:SCP:REP 42->245|1mbbA1|4e-43|9.7|195/198|d.145.1.2| RP:SCP:REP 233->476|1f0xA1|9e-50|15.1|225/237|d.58.32.2| HM:SCP:REP 17->230|1f0xA2|3.4e-69|45.5|211/0|d.145.1.1|1/1|FAD-binding domain| HM:SCP:REP 217->484|1e8gA1|3.5e-72|38.6|246/0|d.58.32.1|1/1|FAD-linked oxidases, C-terminal domain| OP:NHOMO 2558 OP:NHOMOORG 888 OP:PATTERN 22-1-153456555541133221331111122----------------13221----1--12113--1 125451-1111-2-33333-332246434443333328D7145432121111143312--33514684531--------1-141111111---1-------211121212---------------1122222221266655---232322332221112122222232222-1-----1----22233--131122222222223222353111122234413--------2------------------------1111----11--21------------------------------------------------------4-121111111212-122211131-1-1--2-461121--52--1--1-322311411111338662254664544444443445-45643B4855415445349435766432155544562342222222232222325-----------------------------116611655566558575555577B855554496889882444465544858559444322125222222223265515823345453555-322112212554446232--112211211211111111111133211-31213121222212322212122122---5333------21111113213333333-233333333323333333112111111111111111111111121121111--111111111111---1--111-11132445111111-111111111111111242415555464434445333331212211111112222221122222222222232222112-221133--------1-1--------------------------11---2---321 ----332-741-2423465553456543333333334534444233554467A84334344423324334224243313334446312-47443323332322433-324733353321-1332842529L5-4351211322311313131-33341569434322425335342334X3322231-74313286642 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 494 STR:RPRED 99.2 SQ:SECSTR #ccccccTTccHHHHHHccHHHHHHHHHcGGGEEEcccccccccccccccTcccccEEEccccHHHHHHHHHHHHHHTccEEEEcccccTTTTTTccTTcEEEEcTTcccEEEEETTTTEEEEcTTccHHHHHHHHHHTTcTTTEEccccccTTccHHHHHHTTcccccTTccTGGGEEEEEEEETTccEEEcGGGGTcccccccccGGGGcccccEEEEEEEEEcEEccccEEEEEEEEccTTHHHHHHHHHHHHHTccccccEEEEHHHHHHHHccGGGTccccccccHHHHHccHHHHHHHHHHHHHHHTTcTTcEEEEcGGGccTTcHHHHHHHHTTTccccEEEEEccEEcccHHHHHHHHHHHHHHHHHHTccccEEEEEccccEEEEEEEETTcHHHHHHHHHHHHHHHHHHHHTTcccccccGGGHHHHHHHTcHHHHHHHHHHHHHHHHHcTTccccTTGGGcccTTccHGcccccccEEEEEccc### DISOP:02AL 1-6| PSIPRED cccccccccccccHHHHHHHHHHHHHHcccccEEccHHHHHHHHccccccccccEEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccEEEEHHHcccEEEEEccccEEEEEccccHHHHHHHHHHcccEEEccccccccccccccHHHcccccccccccccEEEEEEEEEEcccccEEEEcccccccccccHHHHHHcccccEEEEEEEEEEEEEcccEEEEEEEEEccHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccc //