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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : gmd
DDBJ      :gmd          GDPmannose 4,6-dehydratase
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  592/915 : Eukaryota  125/199 : Viruses  2/175   --->[See Alignment]
c.2.1
:347 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->346 1t2aA PDBj e-106 55.0 %
:RPS:PDB   3->336 1db3A PDBj 2e-34 55.3 %
:RPS:SCOP  3->336 1bxkA  c.2.1.2 * 1e-46 24.8 %
:HMM:SCOP  3->341 1db3A_ c.2.1.2 * 1.4e-77 28.9 %
:RPS:PFM   6->177 PF01370 * Epimerase 1e-14 30.8 %
:HMM:PFM   6->252 PF01370 * Epimerase 2.6e-64 31.0 232/238  
:BLT:SWISS 3->336 GM4D_YERE8 e-120 60.2 %
:PROS 144->172|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21391.1 GT:GENE gmd GT:PRODUCT GDPmannose 4,6-dehydratase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 561627..562670 GB:FROM 561627 GB:TO 562670 GB:DIRECTION + GB:GENE gmd GB:PRODUCT GDPmannose 4,6-dehydratase GB:PROTEIN_ID AAZ21391.1 GB:DB_XREF GI:71062388 GB:GENE:GENE gmd LENGTH 347 SQ:AASEQ MKKKAIIFGITGQDGSYLAELLLKKKYEVHGVKRRSSSLNTSRIDHLYQDPNETKKNFYLHYGDVTDSFSISSLINKIRPDEIYNLAAQSHVAVSFEVPEYTANADAIGALRILESIRSNKLEKKTKFYQAGTSEMFGKVQTVPQNEKTPFYPRSPYGVAKVYAHWVTVNYRESYNIFACNGILFNHESPVRGETFVTKKIVNALCKINIGKQKKLYLGNLDARRDWGHAKDYVIAMWKMMQKKIPGDYVIATGKQYSVKDFVNLVLRELKMKFKWKGNGINTRCYDQNNNCIIECSRKYFRPLEVDTLLGDPRKAKKELKWKPNYKINDLVKEMVYYENLMLTKND GT:EXON 1|1-347:0| BL:SWS:NREP 1 BL:SWS:REP 3->336|GM4D_YERE8|e-120|60.2|334/372| PROS 144->172|PS00061|ADH_SHORT|PDOC00060| SEG 21->26|lllkkk| BL:PDB:NREP 1 BL:PDB:REP 5->346|1t2aA|e-106|55.0|333/338| RP:PDB:NREP 1 RP:PDB:REP 3->336|1db3A|2e-34|55.3|313/335| RP:PFM:NREP 1 RP:PFM:REP 6->177|PF01370|1e-14|30.8|159/232|Epimerase| HM:PFM:NREP 1 HM:PFM:REP 6->252|PF01370|2.6e-64|31.0|232/238|Epimerase| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF01370|IPR001509| GO:PFM GO:0044237|"GO:cellular metabolic process"|PF01370|IPR001509| GO:PFM GO:0050662|"GO:coenzyme binding"|PF01370|IPR001509| RP:SCP:NREP 1 RP:SCP:REP 3->336|1bxkA|1e-46|24.8|307/341|c.2.1.2| HM:SCP:REP 3->341|1db3A_|1.4e-77|28.9|339/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1358 OP:NHOMOORG 763 OP:PATTERN 11--1-1-1--------1---1213221-1-1132113-321133214123221212--11--11--3 -123--21111---21222-22112233333211-1112314431----11-2--1-211--3--2-2-1----------1-3115213224-3111--11223332212--------------1112-232232143334---333333334112232111213243334111311423315--1--1----122222212122211211--31223-1-11-1---1--45111111111111111---------1--11-1-2--11-1---11--1111111111-11-11-11-1111111111111111111111111--21444455513111222---211--11---12432---11-1--1--234-231-----123312311-12211221222221-21321412-321111-241223--3-11-2122-1112-2222222241122323-----------------------------21-1--111113332243333322443333242462222121212111212222211123212--------121-212--21152231221442433351211112232-----1211221111111111-122441-1-211---2--11------------------2--2------112--11122111111--2112121111211-11112--1-1---1111111111111111-11-11111-1---122-2111----1111111112-1--------1----1-------------1-2241-131-31-2-2221--1-1---2----11111----1111222211132321-31334466--------1-----------------------------214-----142 11--111-1-1---1111--1----------------1-11-----11-1-1-111--11112--------------------------1211111---111-223-143421222-211122123131352-222121121132121112-11112222511212111131612---1I211-161391211131112 -----------------------1---------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 347 STR:RPRED 100.0 SQ:SECSTR HccEEEEETTTcHHHHHHHHHHHHTTcEEEEEccTTTccTTcHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHcccEEEEcccccTTTTTTccHHHHHHHHTHHHHHHHHHHHHTTcTTTcEEEEEEEGGGGTTcccccccTTcccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEcTTccTTcHHHHHHHHHHHHHTTccccEEEccTTcEEccEEHHHHHHHHHHTTcccccccEEEcccccEEHHHHHHHHHHTTTEEEEEEccGGGcEEETccTTcEEEEEcGGGccccccccccccHHHHHHHcccccccHHHHHHHHHEcccHTTTTcH DISOP:02AL 346-347| PSIPRED cccEEEEEccccHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccEEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEccccEEEEEEEHHHHHHHHHHHHHcccccEEEEcccccEEHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcc //